View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060R-Insertion-10 (Length: 802)
Name: NF3060R-Insertion-10
Description: NF3060R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060R-Insertion-10 |
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Alignment Details
Target: chr4 (Bit Score: 671; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 9 - 798
Target Start/End: Original strand, 44155087 - 44155863
Alignment:
| Q |
9 |
attgtgagagatccgttgaattccttacacttgtgaattaatttggtgtttctttgattctctcatttaaatatgcatacaggcatgagtgttaatatta |
108 |
Q |
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| T |
44155087 |
attgtgagagatccgttgaattccttacacttgtgaattaatttggtgtttctttgattctctcatttaaatatgcatacaggcatgagtgttaatatta |
44155186 |
T |
|
| Q |
109 |
attctatcgaatcttgtgctacaagtcatgttgcaattaacactaaaaatgaatgaagtgattgtagagaatcgagtgatgcaggcttctatgaaaattt |
208 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44155187 |
attctatcgaatcttgtgctacaagtcatgttgagattaacactaaaaatgaatgaagtgattgtagagaatcgagtgatgcaggcttctatgaaaattt |
44155286 |
T |
|
| Q |
209 |
aatttccaaaataatcctttactcaataagtttacgttgttatttgtttcaatgttatatatctagcaagaataactatcgctgcattaagtgtttatgc |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44155287 |
aatttccaaaataatcctttactcaataagtttacggtgttatttgtttcaatgttatacatctagcaagaataactatcgctgcattaagtgtttatgc |
44155386 |
T |
|
| Q |
309 |
ttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggagcagagtttttctattgaagc |
408 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44155387 |
ttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggagcagagtt------------c |
44155474 |
T |
|
| Q |
409 |
cagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttttttgaaaagaatgcgatcatcaga |
508 |
Q |
| |
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| T |
44155475 |
cagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttttttgaaaagaatgcgatcatcaga |
44155574 |
T |
|
| Q |
509 |
taagtgcagttcatctctatcgagtacattctcacaaatgtgtcactatctaccatcatcagtgttctcactactctcaccatccacattatcctctaag |
608 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44155575 |
taagtgcagtttatctctatcgagtacattctcacaaatgtgtcattagccaccatcatcagtgttctcactactctcaccatccacattatcctctaag |
44155674 |
T |
|
| Q |
609 |
aactttaaattgtgatcaggggttgactatctccaatatgtcttcatttttgcaataccaatgtccttattttgcatttgataaccagtctatacagttt |
708 |
Q |
| |
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| T |
44155675 |
aactttaaatagtgatcaggggttgactatctccaatacgtctccattttggcaataccaatgtccttattttgcatttgataaccagactatacagttt |
44155774 |
T |
|
| Q |
709 |
atactcaagatttggaatgagacctgaatcaccannnnnnnggcatcttatttgttcaatgatttatcttgacaaattcattgcaacgtg |
798 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44155775 |
atactcaagatttggaatgagacctgaatcacca-ttttttggcatcttatttgttcaatgatttatcttgacaaattcattgcaacgtg |
44155863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 289 - 605
Target Start/End: Complemental strand, 40894457 - 40894153
Alignment:
| Q |
289 |
gctgcattaagtgtttatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggag |
388 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
40894457 |
gctgcattaagtgtttatgcttttatgtggccaatatttctagtcatgcttcttaatagttttactctca--ctgatttgcaggtgcctggaggaaggag |
40894360 |
T |
|
| Q |
389 |
caga-gtttttctattgaagccagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaa----gtt |
483 |
Q |
| |
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|||| |||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| |||| ||||||| ||| ||| |
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| T |
40894359 |
cagaggtttttctattgaagcca---------------gtcaagtgcatgaaagatttcatcatgagaggtgaagtaaaagatggtgagaaaagttggtt |
40894275 |
T |
|
| Q |
484 |
ttttgaaaagaatgcgatcatcagataagtgcagttcatctctatcgagtacattctcacaaatgtgtcactatctaccatcatcagtgttctcactact |
583 |
Q |
| |
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| | ||||||| | |||||| || ||||||||||||||||||| | |||||||| || ||||||||| |||| || || |||||||||||||||||| |
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| T |
40894274 |
ctctcaaaagaagccaatcatcgcatgagtgcagttcatctctatcaactacattcttaccaatgtgtcattatccactattatcagtgttctcactact |
40894175 |
T |
|
| Q |
584 |
ctcaccatccacattatcctct |
605 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
40894174 |
ctcaccatccacattatcctct |
40894153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 304 - 730
Target Start/End: Original strand, 44214434 - 44214871
Alignment:
| Q |
304 |
tatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggagcagagt-ttttctat |
402 |
Q |
| |
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|||||| ||| |||||| |||| || |||||||||||||||||||||| | ||||| |||||||||||| ||||||||||||||||| |||| | | |
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| T |
44214434 |
tatgctattaggtggccagtatatcctgtcctgcttcttaatagttttattttcacta--atttgcaggtgtttggaggaaggagcagaggattttttgt |
44214531 |
T |
|
| Q |
403 |
tgaagccagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttttttgaaaagaatgcgatc |
502 |
Q |
| |
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| ||||||||||| ||||||| ||| | || ||||||| ||||||||||||||||||||||| | ||| ||| || ||| | | |||||||||||||| |
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| T |
44214532 |
taaagccagtcaaattgtcagatgtaagacgcctgaaagatttcatcatgagaggtgaagtgaaggatggcgagaaatgttctctcaaaagaatgcgatc |
44214631 |
T |
|
| Q |
503 |
atcagataagtgca------gttcatctctatcgagtacattctcacaaatgtgtcact------atctaccatcatcagtgttctcactactctcacca |
590 |
Q |
| |
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||||||| | || | || |||||||||| | ||||||||||| |||| |||| | ||| |||||| || |||||||||| |||||||||| |
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| T |
44214632 |
atcagatgattgtagtccatgtccatctctatcaactacattctcaccaatgcgtcattcatgtgatccaccatcgtcggtgttctcaccactctcacca |
44214731 |
T |
|
| Q |
591 |
tccacattatcctctaagaactttaaattgtgatcaggggttgactatctccaatatgtcttcatttttgcaataccaatgtccttattttgcatttgat |
690 |
Q |
| |
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|| ||||||||||||||||| | || | ||||||||| |||| ||||| |||| ||| || ||||||||||| ||||||| ||||||| ||||| | |
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| T |
44214732 |
tcaacattatcctctaagaaatctagactgtgatcagatattgatagtctcctatatttctccaattttgcaatactaatgtccatattttgaatttgtt |
44214831 |
T |
|
| Q |
691 |
aaccagtctatacagtttatactcaagatttggaatgaga |
730 |
Q |
| |
|
||| ||||||||||||| |||||||||||| ||||||| |
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| T |
44214832 |
aactagtctatacagttcgtactcaagattttcaatgaga |
44214871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 756 - 802
Target Start/End: Complemental strand, 44146250 - 44146204
Alignment:
| Q |
756 |
ttatttgttcaatgatttatcttgacaaattcattgcaacgtgccct |
802 |
Q |
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| T |
44146250 |
ttatttgttcaatgatttatcttgacaaattcattgcaacgtgccct |
44146204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 765 - 795
Target Start/End: Complemental strand, 40894099 - 40894069
Alignment:
| Q |
765 |
caatgatttatcttgacaaattcattgcaac |
795 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
40894099 |
caatgatttatcttgacaaattcattgcaac |
40894069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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