View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060R-Insertion-13 (Length: 885)
Name: NF3060R-Insertion-13
Description: NF3060R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060R-Insertion-13 |
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Alignment Details
Target: chr8 (Bit Score: 750; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 750; E-Value: 0
Query Start/End: Original strand, 9 - 883
Target Start/End: Original strand, 5040527 - 5041406
Alignment:
| Q |
9 |
gtgattactagggatcatttgcatgggaaaagaagggttaaaagagaaagcaatactagttggattacaatccatagcattaactttgttacctaaattt |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5040527 |
gtgattactagggatcatttgcatgggaaaagaagggttaaaagagaaagcaatactagttggattacaatccatagcattaactttgttacctaaattt |
5040626 |
T |
|
| Q |
109 |
tcaagtgccttaacctgtgaccttaaaaacttgagataatttgcagcttcatcaagcattgaagcagtgtccattttgcttccaccaggtacaatctttt |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5040627 |
tcaagtgccttaacctgtgaccttaaaaacttgagataatttgcagcttcatcaagcattgaagcagtgtccattttgcttccaccaggtacaatctttt |
5040726 |
T |
|
| Q |
209 |
gcgaaaccctaattctttcacctattctttcccttctatgtcttgcagcaacagtttgtggatcatttgatatctttacattcttcctcttaggcnnnnn |
308 |
Q |
| |
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|| |||||||||||||||||| ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
5040727 |
gcaaaaccctaattctttcacttattctttctcttctatgccttgcagcaacagtttgaggatcatttgatatctttacattcttcctcttcggcttttt |
5040826 |
T |
|
| Q |
309 |
nncaattacatcaatatcatccattccaaaattcactggtctaaatgctgctgctctatacatcatttccttcatttgtgctattgcttctggatcagct |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5040827 |
ttcaattacatcaatatcatccattccaaaattcactggtctaaatgctgctgctctatacatcatttccttcatttgtgctattgcttctggatcagct |
5040926 |
T |
|
| Q |
409 |
tcttcaattgaagaagaacagcacattgatgatgaatttggttgttgaaaattaatattagttgaacaaggtcctttatcacatcttggtttcttgcatt |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
5040927 |
tcttcaattgaagaagaacagcacattgatgatgaatttggttgttgaaaattaatattagttgaacaaggtcccttatcacatcttggtttcttgcatt |
5041026 |
T |
|
| Q |
509 |
ttggtggtttatcagtgataagtctaaaaccaccttcaacaggtgaagaattatgaatagtacttgattgtattgcttttcttggatggatgtattgatc |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5041027 |
ttggtggtttatcagtgataagtctaaaaccaccttcaacaggtgaagaattatgaatagtacttgattgtattgcttttcttggatggatgtattgatc |
5041126 |
T |
|
| Q |
609 |
tgaggaactttgagagattgtttcatcaaattcattgagtggacactgaatgtttttgtttccagtaccctctgtagcactgacacttctgatcgaaggc |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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|
| T |
5041127 |
tgaggaactttgagagattgtttcatcaaattcattgagtggacactgaatgtttttgtttccagtaccctctgtagcactgacacttttgatcgaagac |
5041226 |
T |
|
| Q |
709 |
gtgtctggtgtttgcgtccgtgtttgtgtcagtgcttcgtagcttgtactgtttgaaacattactatcagtttcacctgaggaagttgctgtg-tactga |
807 |
Q |
| |
|
|||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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|
| T |
5041227 |
gtgtctggtgttcgcatctgtgtttgtgtcagtgcttcgtagcttgtactgtttgaaacattactatcagtttcacctgaggaggttgctgtgttactga |
5041326 |
T |
|
| Q |
808 |
cataactgaagttccata--gttttgcagtcagaaaaatagctt--gaattccatcattatca-tttcgacagaattgtct |
883 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||| ||||||||||| ||||| |
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|
| T |
5041327 |
cataactgaagttccataagtttttgcagtcag-aaaatagctttgaaattccatcattatcattttcgacagaagtgtct |
5041406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 678 - 719
Target Start/End: Complemental strand, 14229647 - 14229606
Alignment:
| Q |
678 |
ctctgtagcactgacacttctgatcgaaggcgtgtctggtgt |
719 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||| ||||| |
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|
| T |
14229647 |
ctctatagcactgacacttctgatcgaaggcatgtccggtgt |
14229606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 5e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 135 - 415
Target Start/End: Original strand, 43186976 - 43187247
Alignment:
| Q |
135 |
aaacttgagataatttgcagcttcatcaagcattgaagcagtgtccattttgcttccaccaggtacaatcttttgcgaaaccctaattctttcacctatt |
234 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||| ||||||||||| ||| |||||||||| |||||||| ||| | || ||||| ||||||| |||| |
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| T |
43186976 |
aaacttgaggtaattagcagcttcatcaagcattgatgcagtgtccatcttggttccaccaggaacaatcttctgcaagactctaatcctttcacttatt |
43187075 |
T |
|
| Q |
235 |
ctttcccttctatgtcttgcagcaacagtttgtggatcatttgatatctttacattcttcctcttaggcnnnnnnncaattacatcaatatcatccattc |
334 |
Q |
| |
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||||||||||| || || || || |||||||||||||| ||||||||||| ||||||||||| |||||| || ||||| | |||| | |
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|
| T |
43187076 |
ctttcccttctttgcctagccgccacagtttgtggatcctttgatatcttaacattcttccttttaggctt--------ttccatca----cttccaaac |
43187163 |
T |
|
| Q |
335 |
caaaat---tcactggtctaaatgctgctgctctatacatcatttccttcatttgtgctattgcttctggatcagcttcttcaa |
415 |
Q |
| |
|
| |||| |||| || ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||| ||||||| |
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|
| T |
43187164 |
ccaaattcgtcaccggcctaaatgctgcagctctatatatcatttccttcatttgtgctattgcctctggatcaggctcttcaa |
43187247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 154 - 299
Target Start/End: Complemental strand, 6259698 - 6259553
Alignment:
| Q |
154 |
gcttcatcaagcattgaagcagtgtccattttgcttccaccaggtac-aatcttttgcgaaaccctaattctttcacctattctttcccttctatgtctt |
252 |
Q |
| |
|
|||||||| | ||| ||||||||||||||||| ||||||||||||| ||||||| | | | ||| |||||||||| |||||||| |||||||||||| |
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|
| T |
6259698 |
gcttcatctaacatagaagcagtgtccatttttgttccaccaggtactaatcttt-gtaatatccttattctttcactaattctttctcttctatgtctt |
6259600 |
T |
|
| Q |
253 |
gcagcaacagtttgtggatcatttgatatctttacattcttcctctt |
299 |
Q |
| |
|
|| || ||| |||||||||| ||||| ||||| |||||||| ||||| |
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|
| T |
6259599 |
gctgctacactttgtggatcctttgaaatcttcacattctttctctt |
6259553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 678 - 719
Target Start/End: Complemental strand, 28136322 - 28136281
Alignment:
| Q |
678 |
ctctgtagcactgacacttctgatcgaaggcgtgtctggtgt |
719 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28136322 |
ctctatagcactgacacttctgatcgaagacgtgtctggtgt |
28136281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 677 - 719
Target Start/End: Complemental strand, 13635682 - 13635640
Alignment:
| Q |
677 |
cctctgtagcactgacacttctgatcgaaggcgtgtctggtgt |
719 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
13635682 |
cctcagtagcactgacacttctgatagaaggcgtgtctggtgt |
13635640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 678 - 719
Target Start/End: Original strand, 14782796 - 14782837
Alignment:
| Q |
678 |
ctctgtagcactgacacttctgatcgaaggcgtgtctggtgt |
719 |
Q |
| |
|
||||||||||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
14782796 |
ctctgtagcaccgacacttctgatggaaagcgtgtctggtgt |
14782837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 681 - 719
Target Start/End: Complemental strand, 4785083 - 4785045
Alignment:
| Q |
681 |
tgtagcactgacacttctgatcgaaggcgtgtctggtgt |
719 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
4785083 |
tgtagcaccgacacttctgatcgaagacgtgtctggtgt |
4785045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 718
Target Start/End: Complemental strand, 18263604 - 18263563
Alignment:
| Q |
677 |
cctctgtagcactgacacttctgatcgaaggcgtgtctggtg |
718 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||| |||| |
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|
| T |
18263604 |
cctctgtagcaccgacacttctgatcgaagacgtgtcaggtg |
18263563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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