View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3060R-Insertion-14 (Length: 900)

Name: NF3060R-Insertion-14
Description: NF3060R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3060R-Insertion-14
NF3060R-Insertion-14
[»] chr4 (21 HSPs)
chr4 (9-291)||(39292503-39292786)
chr4 (703-894)||(39292010-39292209)
chr4 (191-264)||(39235421-39235494)
chr4 (189-252)||(39047759-39047822)
chr4 (191-264)||(39053763-39053836)
chr4 (416-499)||(39292270-39292353)
chr4 (416-463)||(37175798-37175845)
chr4 (538-599)||(36203229-36203290)
chr4 (548-599)||(20096287-20096338)
chr4 (548-598)||(13121538-13121588)
chr4 (543-601)||(13276120-13276178)
chr4 (549-587)||(18541506-18541544)
chr4 (548-598)||(18635524-18635574)
chr4 (553-599)||(22164291-22164337)
chr4 (553-599)||(29737666-29737712)
chr4 (556-598)||(33024150-33024192)
chr4 (553-599)||(43722758-43722804)
chr4 (544-601)||(8494978-8495035)
chr4 (536-601)||(11286786-11286851)
chr4 (548-593)||(38374956-38375001)
chr4 (544-601)||(38812862-38812919)
[»] chr7 (15 HSPs)
chr7 (191-264)||(7562764-7562837)
chr7 (536-599)||(964746-964809)
chr7 (543-594)||(1285081-1285132)
chr7 (536-601)||(3584195-3584260)
chr7 (553-602)||(22267571-22267620)
chr7 (414-459)||(24934749-24934794)
chr7 (547-595)||(3948051-3948099)
chr7 (548-600)||(35222916-35222968)
chr7 (543-599)||(42829246-42829302)
chr7 (558-601)||(20762831-20762874)
chr7 (548-599)||(30857241-30857292)
chr7 (537-599)||(1399155-1399217)
chr7 (545-579)||(28479870-28479904)
chr7 (537-598)||(5352323-5352384)
chr7 (542-579)||(37307885-37307922)
[»] chr1 (22 HSPs)
chr1 (553-600)||(22388197-22388244)
chr1 (553-600)||(41573291-41573338)
chr1 (541-600)||(43840335-43840394)
chr1 (412-499)||(44529222-44529308)
chr1 (549-599)||(41998344-41998394)
chr1 (545-598)||(2884462-2884515)
chr1 (549-601)||(18091194-18091247)
chr1 (537-598)||(27853349-27853410)
chr1 (548-597)||(44220982-44221031)
chr1 (536-592)||(49868011-49868067)
chr1 (536-599)||(7732415-7732478)
chr1 (548-599)||(16033467-16033518)
chr1 (553-600)||(29701342-29701389)
chr1 (548-595)||(41974758-41974805)
chr1 (553-599)||(30678835-30678881)
chr1 (542-600)||(41032923-41032981)
chr1 (548-598)||(44641521-44641571)
chr1 (553-594)||(9116894-9116935)
chr1 (536-601)||(11014223-11014288)
chr1 (536-597)||(23772282-23772343)
chr1 (536-569)||(27687617-27687650)
chr1 (543-600)||(41973247-41973304)
[»] chr2 (23 HSPs)
chr2 (543-601)||(11931596-11931654)
chr2 (548-599)||(29896311-29896362)
chr2 (545-595)||(1238159-1238209)
chr2 (548-601)||(3197096-3197149)
chr2 (553-590)||(3904204-3904241)
chr2 (553-601)||(28277698-28277746)
chr2 (545-601)||(45032684-45032740)
chr2 (554-601)||(6238587-6238634)
chr2 (536-579)||(7262819-7262862)
chr2 (548-599)||(27244650-27244701)
chr2 (548-595)||(34364512-34364559)
chr2 (536-579)||(37830726-37830769)
chr2 (548-598)||(6723094-6723144)
chr2 (543-597)||(7537105-7537159)
chr2 (543-601)||(9517021-9517079)
chr2 (412-446)||(17897868-17897902)
chr2 (552-598)||(43356654-43356700)
chr2 (549-594)||(13922650-13922695)
chr2 (536-573)||(30045472-30045509)
chr2 (536-573)||(30050635-30050672)
chr2 (536-573)||(30141679-30141716)
chr2 (545-594)||(30929059-30929108)
chr2 (412-449)||(39955494-39955531)
[»] chr8 (15 HSPs)
chr8 (548-601)||(7553670-7553723)
chr8 (412-459)||(3036534-3036581)
chr8 (536-579)||(24696011-24696054)
chr8 (543-601)||(26886054-26886112)
chr8 (543-599)||(8837913-8837969)
chr8 (548-599)||(6109162-6109213)
chr8 (543-598)||(6447183-6447238)
chr8 (541-600)||(13575281-13575340)
chr8 (548-595)||(33482166-33482213)
chr8 (545-599)||(8687859-8687913)
chr8 (549-598)||(8982561-8982610)
chr8 (536-593)||(10601762-10601819)
chr8 (548-601)||(14303156-14303209)
chr8 (553-598)||(32223901-32223946)
chr8 (548-601)||(33620889-33620942)
[»] chr6 (11 HSPs)
chr6 (536-579)||(2692228-2692271)
chr6 (554-598)||(7927694-7927738)
chr6 (412-460)||(28478663-28478711)
chr6 (412-460)||(29791118-29791166)
chr6 (548-599)||(12412270-12412321)
chr6 (536-598)||(8809300-8809362)
chr6 (552-598)||(12336347-12336393)
chr6 (556-598)||(21884981-21885023)
chr6 (546-599)||(2445292-2445345)
chr6 (546-599)||(3373396-3373449)
chr6 (536-601)||(31971520-31971585)
[»] chr5 (11 HSPs)
chr5 (548-599)||(40445976-40446027)
chr5 (536-601)||(1082224-1082289)
chr5 (543-603)||(8545001-8545061)
chr5 (553-601)||(10531531-10531579)
chr5 (541-595)||(17046331-17046385)
chr5 (553-599)||(28447486-28447532)
chr5 (548-606)||(34436837-34436895)
chr5 (553-598)||(4432110-4432155)
chr5 (548-581)||(7861018-7861051)
chr5 (536-601)||(8885246-8885311)
chr5 (549-598)||(42663222-42663271)
[»] chr3 (19 HSPs)
chr3 (553-600)||(7827500-7827547)
chr3 (553-600)||(7829888-7829935)
chr3 (548-599)||(32753821-32753872)
chr3 (549-604)||(48924337-48924392)
chr3 (548-594)||(48517669-48517715)
chr3 (548-593)||(12976619-12976664)
chr3 (548-600)||(28093346-28093398)
chr3 (543-601)||(7738660-7738718)
chr3 (543-593)||(10922320-10922370)
chr3 (541-591)||(39869817-39869867)
chr3 (543-597)||(46226089-46226143)
chr3 (553-598)||(7464513-7464558)
chr3 (548-597)||(8139710-8139759)
chr3 (536-601)||(9598430-9598495)
chr3 (553-602)||(22462302-22462351)
chr3 (553-602)||(23332640-23332689)
chr3 (548-601)||(28052399-28052452)
chr3 (412-449)||(31110632-31110669)
chr3 (545-598)||(38387966-38388019)
[»] scaffold0160 (1 HSPs)
scaffold0160 (536-599)||(22904-22967)
[»] scaffold0143 (1 HSPs)
scaffold0143 (548-595)||(4463-4510)
[»] scaffold0016 (1 HSPs)
scaffold0016 (548-598)||(99031-99081)
[»] scaffold0045 (2 HSPs)
scaffold0045 (549-598)||(63856-63905)
scaffold0045 (549-598)||(71188-71237)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-108; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 9 - 291
Target Start/End: Complemental strand, 39292786 - 39292503
Alignment:
Q  9 atatctactattcttttccatcttcttctaccgtaaatcttgttcgagatctatataactagttgcaatannnnnnnnnngaaatatagttgcaagatat 108  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||          ||||||||||||||||||||    
T  39292786 atatctactattcttttccttcttcttctaccgtaaatcttgttcgagatctttataactagttgcaatatatttttttggaaatatagttgcaagatat 39292687  T
Q  109 ttttgtcaattactaagtcttatattcggtaatttaattaacacttgtgttctgctttgtaatatnnnnnnnnnn-ccttgtattgtgcagtatatactt 207  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||    
T  39292686 ttttctcaactactaagtcttatattcggtaatttaattaacacttgtgttctgctttgtaatataaaaaaaaaaaccttgtattgtgcagtatatactt 39292587  T
Q  208 gaaacaagcgtgtttccaagagaacacccatgcttgaaggagcttagggagatgacactaacacaccctaagtaagaccgtaga 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39292586 gaaacaagcgtgtttccaagagaacacccatgcttgaaggagcttagggagatgacactaacacaccctaagtaagaccgtaga 39292503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 703 - 894
Target Start/End: Complemental strand, 39292209 - 39292010
Alignment:
Q  703 taatgttttaaatgaatctcaattactcaaatcttgaaagtttacacataaagatgtattaatt-------taatgacatacacgattgatgttgtaaaa 795  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  39292209 taatgttttaaatgaatctcaattactcatatcttcaaagtttacacataaagatgtattaattaattaattaatgacatacacgattgatgttgtaaaa 39292110  T
Q  796 caggtatatgatgggctacacccggtgatgaagggccagcttatcaacatgcttattaagctcat-gatgcaaagaacac-atgg-aattggtgtctaca 892  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||  ||||||||||||| |||| ||||||||||||||    
T  39292109 caggtatatgat-ggctacacccggtgatgaa-ggccagcttatcaacatgctaattaagctcatcaatgcaaagaacacaatggaaattggtgtctaca 39292012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 39235421 - 39235494
Alignment:
Q  191 ttgtgcagtatatacttgaaacaagcgtgtttccaagagaacacccatgcttgaaggagcttagggagatgaca 264  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||  | |||||||||    
T  39235421 ttgtgcagtatatacttgacacaagtgtgtttccaagagaacacccttgcttgaaggagctccgtgagatgaca 39235494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 39047759 - 39047822
Alignment:
Q  189 tattgtgcagtatatacttgaaacaagcgtgtttccaagagaacacccatgcttgaaggagctt 252  Q
    ||||||||||||||||||||| || || |||||||||||||| |||||||||||||||||||||    
T  39047759 tattgtgcagtatatacttgagaccagtgtgtttccaagagagcacccatgcttgaaggagctt 39047822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 39053763 - 39053836
Alignment:
Q  191 ttgtgcagtatatacttgaaacaagcgtgtttccaagagaacacccatgcttgaaggagcttagggagatgaca 264  Q
    ||||||||||||||||||| ||||| ||||||||||  |||||||| ||||||||||||||| | |||||||||    
T  39053763 ttgtgcagtatatacttgacacaagtgtgtttccaaatgaacacccttgcttgaaggagcttcgtgagatgaca 39053836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 416 - 499
Target Start/End: Complemental strand, 39292353 - 39292270
Alignment:
Q  416 aatatgttgaatgcataatttttaagataaagttgctactttaagcttttttatcaaatgtcct-aaaacacttgttaacatttc 499  Q
    |||| ||||||||||||||||  |||||||||||||||||||||| ||||||||||||| || | ||||||| ||||||||||||    
T  39292353 aataagttgaatgcataatttccaagataaagttgctactttaag-ttttttatcaaatatcttaaaaacacctgttaacatttc 39292270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 37175798 - 37175845
Alignment:
Q  416 aatatgttgaatgcataatttttaagataaagttgctactttaagctt 463  Q
    |||| ||||||||||||||||  |||||||||||||||||||||||||    
T  37175798 aataagttgaatgcataatttccaagataaagttgctactttaagctt 37175845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 538 - 599
Target Start/End: Complemental strand, 36203290 - 36203229
Alignment:
Q  538 aatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    ||||||||| |||| |||||||||||||||||| |||||||| |  ||| ||||||||||||    
T  36203290 aatctcggaccttgcatatattatgcattgtccttatcaactgagctaagctcacgaggaca 36203229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 599
Target Start/End: Original strand, 20096287 - 20096338
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    |||| |||||||||||||| |||||| ||||| | |||||||||||||||||    
T  20096287 cttgcatatattatgcattatccctaccaactgagttaaactcacgaggaca 20096338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 548 - 598
Target Start/End: Complemental strand, 13121588 - 13121538
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 598  Q
    |||| ||||||||||||||||||||| |||||||  ||| |||||||||||    
T  13121588 cttgcatatattatgcattgtccctaccaactaagctaagctcacgaggac 13121538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 13276178 - 13276120
Alignment:
Q  543 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    |||| |||| ||||||||||||||||||||| ||| | | |||| ||||||||||||||    
T  13276178 cggaccttgcatatattatgcattgtccctaccaattgagttaagctcacgaggacaaa 13276120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 549 - 587
Target Start/End: Complemental strand, 18541544 - 18541506
Alignment:
Q  549 ttgtatatattatgcattgtccctatcaactaaattaaa 587  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  18541544 ttgtatatattatgcattgtttctatcaactaaattaaa 18541506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 548 - 598
Target Start/End: Complemental strand, 18635574 - 18635524
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 598  Q
    ||||||||||||||||||||||| |||||||| | |||| |||||| ||||    
T  18635574 cttgtatatattatgcattgtccttatcaactgagttaagctcacggggac 18635524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 553 - 599
Target Start/End: Original strand, 22164291 - 22164337
Alignment:
Q  553 atatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    |||||||||||||||| |||| |||||||  ||||||||||||||||    
T  22164291 atatattatgcattgttcctaccaactaagctaaactcacgaggaca 22164337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 553 - 599
Target Start/End: Complemental strand, 29737712 - 29737666
Alignment:
Q  553 atatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    |||||||||||||||| |||| |||||||||||| ||||| ||||||    
T  29737712 atatattatgcattgttcctagcaactaaattaagctcacaaggaca 29737666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 556 - 598
Target Start/End: Complemental strand, 33024192 - 33024150
Alignment:
Q  556 tattatgcattgtccctatcaactaaattaaactcacgaggac 598  Q
    ||||||||||||||| || ||||||| ||||||||||||||||    
T  33024192 tattatgcattgtccataccaactaagttaaactcacgaggac 33024150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 553 - 599
Target Start/End: Complemental strand, 43722804 - 43722758
Alignment:
Q  553 atatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    |||||||||||||||||| || ||||| | |||||||||||||||||    
T  43722804 atatattatgcattgtccataccaactgagttaaactcacgaggaca 43722758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 601
Target Start/End: Complemental strand, 8495035 - 8494978
Alignment:
Q  544 ggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    |||||||| ||||||||||||||||||||| ||||| |  |||  |||||||||||||    
T  8495035 ggatcttgcatatattatgcattgtccctaccaactgagctaagttcacgaggacaaa 8494978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 601
Target Start/End: Original strand, 11286786 - 11286851
Alignment:
Q  536 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    |||||||| || |||| ||||||||||||||||| ||| ||||| || ||| |||| |||||||||    
T  11286786 tgaatctcagaccttgcatatattatgcattgtctctaccaactgaactaagctcaggaggacaaa 11286851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 593
Target Start/End: Complemental strand, 38375001 - 38374956
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacg 593  Q
    |||| ||||||||||||||||||||| ||||||| |||| ||||||    
T  38375001 cttgcatatattatgcattgtccctaccaactaagttaagctcacg 38374956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 601
Target Start/End: Original strand, 38812862 - 38812919
Alignment:
Q  544 ggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    |||||||| ||||||||||||||||||||| | ||| |  |||||||||||| |||||    
T  38812862 ggatcttgcatatattatgcattgtccctaccgactgagctaaactcacgagaacaaa 38812919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 4e-19; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 7562764 - 7562837
Alignment:
Q  191 ttgtgcagtatatacttgaaacaagcgtgtttccaagagaacacccatgcttgaaggagcttagggagatgaca 264  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||  | |||||||||    
T  7562764 ttgtgcagtatatacttgacacaagtgtgtttccaagagaacacccttgcttgaaggagctccgtgagatgaca 7562837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 536 - 599
Target Start/End: Original strand, 964746 - 964809
Alignment:
Q  536 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    ||||||||||||||| |||||||||||||||||  ||||| ||| | |||| ||||||||||||    
T  964746 tgaatctcggatcttatatatattatgcattgtttctatcgactgagttaagctcacgaggaca 964809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 543 - 594
Target Start/End: Original strand, 1285081 - 1285132
Alignment:
Q  543 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacga 594  Q
    ||||||||| |||||||||||||||| |||||||||| | ||||||||||||    
T  1285081 cggatcttgcatatattatgcattgttcctatcaactgagttaaactcacga 1285132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 536 - 601
Target Start/End: Complemental strand, 3584260 - 3584195
Alignment:
Q  536 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    ||||||||| | |||| |||||||||||||||||| || ||||||| |||| ||| ||||||||||    
T  3584260 tgaatctcgtaccttgcatatattatgcattgtccttaccaactaagttaagctcgcgaggacaaa 3584195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 553 - 602
Target Start/End: Complemental strand, 22267620 - 22267571
Alignment:
Q  553 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaag 602  Q
    ||||||||||||||||| ||| ||||| | ||||||||||||||||||||    
T  22267620 atatattatgcattgtctctaccaactgagttaaactcacgaggacaaag 22267571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 459
Target Start/End: Complemental strand, 24934794 - 24934749
Alignment:
Q  414 ttaatatgttgaatgcataatttttaagataaagttgctactttaa 459  Q
    |||||| |||||||||| ||||| ||||||||||||||||||||||    
T  24934794 ttaataagttgaatgcacaatttctaagataaagttgctactttaa 24934749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 547 - 595
Target Start/End: Complemental strand, 3948099 - 3948051
Alignment:
Q  547 tcttgtatatattatgcattgtccctatcaactaaattaaactcacgag 595  Q
    ||||| ||||||||||||||||| ||||||||| | |||||||||||||    
T  3948099 tcttgcatatattatgcattgtctctatcaactgagttaaactcacgag 3948051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 548 - 600
Target Start/End: Complemental strand, 35222968 - 35222916
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 600  Q
    |||| |||||| |||||||||||||||||||| |  |||||||||||||||||    
T  35222968 cttgcatatatcatgcattgtccctatcaactgacctaaactcacgaggacaa 35222916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 543 - 599
Target Start/End: Original strand, 42829246 - 42829302
Alignment:
Q  543 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    |||| |||| ||||||||||||||||||||||||||| | | || ||||||||||||    
T  42829246 cggagcttgcatatattatgcattgtccctatcaactgagtcaagctcacgaggaca 42829302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 601
Target Start/End: Complemental strand, 20762874 - 20762831
Alignment:
Q  558 ttatgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    ||||||||||| |||||||||| || ||||||||||||||||||    
T  20762874 ttatgcattgttcctatcaactgaactaaactcacgaggacaaa 20762831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 599
Target Start/End: Complemental strand, 30857292 - 30857241
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    |||| |||||||||||||||||| || |||||||  ||||||||||||||||    
T  30857292 cttgcatatattatgcattgtccataccaactaagctaaactcacgaggaca 30857241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 537 - 599
Target Start/End: Complemental strand, 1399217 - 1399155
Alignment:
Q  537 gaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    ||||||| || |||| |||||| ||||||||||| || ||||| | |||||||||||||||||    
T  1399217 gaatctcagaccttgcatatatcatgcattgtccataccaactgagttaaactcacgaggaca 1399155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 545 - 579
Target Start/End: Original strand, 28479870 - 28479904
Alignment:
Q  545 gatcttgtatatattatgcattgtccctatcaact 579  Q
    |||||||||||||||||||||||||| ||||||||    
T  28479870 gatcttgtatatattatgcattgtccttatcaact 28479904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 598
Target Start/End: Complemental strand, 5352384 - 5352323
Alignment:
Q  537 gaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 598  Q
    |||||||||| ||||||||||||||| ||||||| || ||||| |  ||| |||||||||||    
T  5352384 gaatctcggaccttgtatatattatgtattgtccttaccaactgagctaagctcacgaggac 5352323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 579
Target Start/End: Original strand, 37307885 - 37307922
Alignment:
Q  542 tcggatcttgtatatattatgcattgtccctatcaact 579  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  37307885 tcggatcttgcatatattatgcattgttcctatcaact 37307922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 553 - 600
Target Start/End: Original strand, 22388197 - 22388244
Alignment:
Q  553 atatattatgcattgtccctatcaactaaattaaactcacgaggacaa 600  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  22388197 atatattatgcattgtccctatcaactaagttaaacttacgaggacaa 22388244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 553 - 600
Target Start/End: Original strand, 41573291 - 41573338
Alignment:
Q  553 atatattatgcattgtccctatcaactaaattaaactcacgaggacaa 600  Q
    ||||||||||||||||||||| ||||| | ||||||||||||||||||    
T  41573291 atatattatgcattgtccctaccaactgagttaaactcacgaggacaa 41573338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 541 - 600
Target Start/End: Original strand, 43840335 - 43840394
Alignment:
Q  541 ctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 600  Q
    ||||||||||  |||| ||||||||||||| |||||||| | ||||||||||||||||||    
T  43840335 ctcggatcttacatattttatgcattgtccatatcaactgagttaaactcacgaggacaa 43840394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 412 - 499
Target Start/End: Complemental strand, 44529308 - 44529222
Alignment:
Q  412 ttttaatatgttgaatgcataatttttaagataaagttgctactttaagcttttttatcaaatgtcctaaaacacttgttaacatttc 499  Q
    |||||||||||||||| || || ||||||||||||  | | ||||||| ||| || |||||||||||||| |||||||||| ||||||    
T  44529308 ttttaatatgttgaatacacaacttttaagataaaacttccactttaaacttctt-atcaaatgtcctaagacacttgttagcatttc 44529222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 549 - 599
Target Start/End: Complemental strand, 41998394 - 41998344
Alignment:
Q  549 ttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    |||||||||||||| |||||||||||||||| | |||| ||||||||||||    
T  41998394 ttgtatatattatgaattgtccctatcaactgagttaatctcacgaggaca 41998344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 598
Target Start/End: Original strand, 2884462 - 2884515
Alignment:
Q  545 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 598  Q
    |||||||||||||||||||||||||| |||||||| | ||||  ||||||||||    
T  2884462 gatcttgtatatattatgcattgtccatatcaactgagttaaggtcacgaggac 2884515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 549 - 601
Target Start/End: Complemental strand, 18091247 - 18091194
Alignment:
Q  549 ttgtatatatt-atgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    ||||||||||| |||||||||||||||||||| | |||| ||||||||||||||    
T  18091247 ttgtatatatttatgcattgtccctatcaactgagttaagctcacgaggacaaa 18091194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 598
Target Start/End: Complemental strand, 27853410 - 27853349
Alignment:
Q  537 gaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 598  Q
    ||||| |||||||||||||||||||||||||| | || ||||| | |||| |||||||||||    
T  27853410 gaatcccggatcttgtatatattatgcattgttcataccaactgagttaagctcacgaggac 27853349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 597
Target Start/End: Complemental strand, 44221031 - 44220982
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgagga 597  Q
    |||||||||||| ||||||||| ||||||||||| |||| ||||||||||    
T  44221031 cttgtatatattgtgcattgtctctatcaactaagttaagctcacgagga 44220982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 536 - 592
Target Start/End: Complemental strand, 49868067 - 49868011
Alignment:
Q  536 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcac 592  Q
    ||||||||||| |||| |||||||||||||| ||| |||||||| | ||||||||||    
T  49868067 tgaatctcggaccttgcatatattatgcattatccatatcaactgagttaaactcac 49868011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 599
Target Start/End: Complemental strand, 7732478 - 7732415
Alignment:
Q  536 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    |||||| ||||||||| |||||||||||||| |||  ||||||| |  ||||||||||||||||    
T  7732478 tgaatcccggatcttggatatattatgcattatccaaatcaactgagctaaactcacgaggaca 7732415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 599
Target Start/End: Original strand, 16033467 - 16033518
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    |||| ||||||||||||||||||||||||||| | | || ||||||||||||    
T  16033467 cttgcatatattatgcattgtccctatcaactgagtcaagctcacgaggaca 16033518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 600
Target Start/End: Original strand, 29701342 - 29701389
Alignment:
Q  553 atatattatgcattgtccctatcaactaaattaaactcacgaggacaa 600  Q
    |||||||||||||||||| |||||||||| |||| ||||||| |||||    
T  29701342 atatattatgcattgtccatatcaactaagttaagctcacgaagacaa 29701389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 595
Target Start/End: Complemental strand, 41974805 - 41974758
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgag 595  Q
    |||| |||||||||||||| |||||||||||| || ||||||||||||    
T  41974805 cttgcatatattatgcattatccctatcaactgaactaaactcacgag 41974758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 553 - 599
Target Start/End: Original strand, 30678835 - 30678881
Alignment:
Q  553 atatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    ||||||||||||||||||||| ||||| | |||| ||||||||||||    
T  30678835 atatattatgcattgtccctaccaactgagttaagctcacgaggaca 30678881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 542 - 600
Target Start/End: Complemental strand, 41032981 - 41032923
Alignment:
Q  542 tcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 600  Q
    ||||| ||||||||| ||||||||||| | |||||||| | |||| |||||||||||||    
T  41032981 tcggaccttgtatattttatgcattgttcatatcaactgagttaagctcacgaggacaa 41032923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 548 - 598
Target Start/End: Complemental strand, 44641571 - 44641521
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 598  Q
    |||| |||||||||||||||||| |||||||| |  |||||||||||||||    
T  44641571 cttgcatatattatgcattgtccatatcaactgagctaaactcacgaggac 44641521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 594
Target Start/End: Original strand, 9116894 - 9116935
Alignment:
Q  553 atatattatgcattgtccctatcaactaaattaaactcacga 594  Q
    |||||||||||||||||| |||||||| | ||||||||||||    
T  9116894 atatattatgcattgtccatatcaactgagttaaactcacga 9116935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 601
Target Start/End: Complemental strand, 11014288 - 11014223
Alignment:
Q  536 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    |||||| || |||||| |||||||||||| |||| ||| ||||| |  ||||||||||||||||||    
T  11014288 tgaatcccgaatcttgcatatattatgcactgtctctaccaactgagctaaactcacgaggacaaa 11014223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 597
Target Start/End: Original strand, 23772282 - 23772343
Alignment:
Q  536 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgagga 597  Q
    |||||||| ||||||||||||||||| |||||| ||||  |||| || |||| |||||||||    
T  23772282 tgaatctcagatcttgtatatattatacattgttcctacaaactgaactaaattcacgagga 23772343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 569
Target Start/End: Original strand, 27687617 - 27687650
Alignment:
Q  536 tgaatctcggatcttgtatatattatgcattgtc 569  Q
    ||||||||| ||||||||||||||||||||||||    
T  27687617 tgaatctcgtatcttgtatatattatgcattgtc 27687650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 600
Target Start/End: Complemental strand, 41973304 - 41973247
Alignment:
Q  543 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 600  Q
    |||| |||| ||||||||||||||||||||| ||| ||| |||| ||| |||||||||    
T  41973304 cggaccttgcatatattatgcattgtccctaccaattaagttaagctcgcgaggacaa 41973247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 11931654 - 11931596
Alignment:
Q  543 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    ||||||||| ||||||||||||||||||||| ||| |||| ||| ||||||||||||||    
T  11931654 cggatcttgcatatattatgcattgtccctaccaattaaactaagctcacgaggacaaa 11931596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 548 - 599
Target Start/End: Original strand, 29896311 - 29896362
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    |||| ||||||||||||||||  ||||||||| |||||||||||||||||||    
T  29896311 cttgcatatattatgcattgtttctatcaactgaattaaactcacgaggaca 29896362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 545 - 595
Target Start/End: Complemental strand, 1238209 - 1238159
Alignment:
Q  545 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacgag 595  Q
    ||||||||||||||||||||||||||||||||| | | |||| ||||||||    
T  1238209 gatcttgtatatattatgcattgtccctatcaattgagttaagctcacgag 1238159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 601
Target Start/End: Original strand, 3197096 - 3197149
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    |||| ||||||||||||||||||||| ||||| |  ||||||||||||||||||    
T  3197096 cttgcatatattatgcattgtccctaccaactgagctaaactcacgaggacaaa 3197149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 553 - 590
Target Start/End: Complemental strand, 3904241 - 3904204
Alignment:
Q  553 atatattatgcattgtccctatcaactaaattaaactc 590  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  3904241 atatattatgcattgtccctatcaactaagttaaactc 3904204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 553 - 601
Target Start/End: Original strand, 28277698 - 28277746
Alignment:
Q  553 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    |||||||||||||||||| || |||||||  ||||||||||||||||||    
T  28277698 atatattatgcattgtccttaccaactaagctaaactcacgaggacaaa 28277746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 545 - 601
Target Start/End: Complemental strand, 45032740 - 45032684
Alignment:
Q  545 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    ||||||| ||||||||||||||||||||| ||||| |  ||| ||||||||||||||    
T  45032740 gatcttgcatatattatgcattgtccctaccaactgaggtaagctcacgaggacaaa 45032684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 554 - 601
Target Start/End: Original strand, 6238587 - 6238634
Alignment:
Q  554 tatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    |||||||||||||||||||| ||| |||  ||||||||||||||||||    
T  6238587 tatattatgcattgtccctaccaattaagctaaactcacgaggacaaa 6238634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 579
Target Start/End: Complemental strand, 7262862 - 7262819
Alignment:
Q  536 tgaatctcggatcttgtatatattatgcattgtccctatcaact 579  Q
    |||||||  |||||||||||||||||||||||||| ||||||||    
T  7262862 tgaatctttgatcttgtatatattatgcattgtccatatcaact 7262819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 599
Target Start/End: Complemental strand, 27244701 - 27244650
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    |||| ||||||||||||||||||||||||||| |  ||| ||||||||||||    
T  27244701 cttgcatatattatgcattgtccctatcaactgagctaagctcacgaggaca 27244650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 595
Target Start/End: Original strand, 34364512 - 34364559
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgag 595  Q
    ||||||||||||||||||| | |||| ||||||| |||||||||||||    
T  34364512 cttgtatatattatgcattattcctaccaactaagttaaactcacgag 34364559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 579
Target Start/End: Complemental strand, 37830769 - 37830726
Alignment:
Q  536 tgaatctcggatcttgtatatattatgcattgtccctatcaact 579  Q
    ||||||| ||||||||||||||||||| |||||||||| |||||    
T  37830769 tgaatcttggatcttgtatatattatgtattgtccctaccaact 37830726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 548 - 598
Target Start/End: Original strand, 6723094 - 6723144
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 598  Q
    |||| ||||||||| |||||||| |||||||| | ||||||||||||||||    
T  6723094 cttgcatatattatacattgtccatatcaactgagttaaactcacgaggac 6723144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 543 - 597
Target Start/End: Complemental strand, 7537159 - 7537105
Alignment:
Q  543 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgagga 597  Q
    |||| |||| |||||||||||||||| |||||||||| | |||| ||||||||||    
T  7537159 cggaccttgcatatattatgcattgttcctatcaactgagttaatctcacgagga 7537105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 9517021 - 9517079
Alignment:
Q  543 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    |||||||||||||||||||||||||| | || ||||| |  ||| ||||||||||||||    
T  9517021 cggatcttgtatatattatgcattgttcataccaactgagctaatctcacgaggacaaa 9517079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 412 - 446
Target Start/End: Original strand, 17897868 - 17897902
Alignment:
Q  412 ttttaatatgttgaatgcataatttttaagataaa 446  Q
    ||||||||||||||||||| |||||||||||||||    
T  17897868 ttttaatatgttgaatgcacaatttttaagataaa 17897902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 598
Target Start/End: Original strand, 43356654 - 43356700
Alignment:
Q  552 tatatattatgcattgtccctatcaactaaattaaactcacgaggac 598  Q
    |||||||||||||||||||||| |||||||  ||||||||| |||||    
T  43356654 tatatattatgcattgtccctaacaactaagataaactcactaggac 43356700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 594
Target Start/End: Original strand, 13922650 - 13922695
Alignment:
Q  549 ttgtatatattatgcattgtccctatcaactaaattaaactcacga 594  Q
    ||||||||||||||||||||||||| ||||| | |||| |||||||    
T  13922650 ttgtatatattatgcattgtccctaccaactgagttaagctcacga 13922695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 573
Target Start/End: Complemental strand, 30045509 - 30045472
Alignment:
Q  536 tgaatctcggatcttgtatatattatgcattgtcccta 573  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  30045509 tgaatctcgaaccttgtatatattatgcattgtcccta 30045472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 573
Target Start/End: Complemental strand, 30050672 - 30050635
Alignment:
Q  536 tgaatctcggatcttgtatatattatgcattgtcccta 573  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  30050672 tgaatctcgaaccttgtatatattatgcattgtcccta 30050635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 573
Target Start/End: Complemental strand, 30141716 - 30141679
Alignment:
Q  536 tgaatctcggatcttgtatatattatgcattgtcccta 573  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  30141716 tgaatctcgaaccttgtatatattatgcattgtcccta 30141679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 545 - 594
Target Start/End: Original strand, 30929059 - 30929108
Alignment:
Q  545 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacga 594  Q
    |||||| ||||||||||||||||||| |||||||| | ||||||| ||||    
T  30929059 gatcttatatatattatgcattgtccatatcaactgagttaaacttacga 30929108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 449
Target Start/End: Original strand, 39955494 - 39955531
Alignment:
Q  412 ttttaatatgttgaatgcataatttttaagataaagtt 449  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  39955494 ttttaatatgttgaatgcacaattttaaagataaagtt 39955531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 548 - 601
Target Start/End: Complemental strand, 7553723 - 7553670
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    |||| ||||||||||||||||||||| ||||| | |||||||||||||||||||    
T  7553723 cttgcatatattatgcattgtccctaccaactgagttaaactcacgaggacaaa 7553670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 412 - 459
Target Start/End: Original strand, 3036534 - 3036581
Alignment:
Q  412 ttttaatatgttgaatgcataatttttaagataaagttgctactttaa 459  Q
    |||||||| ||||||| || ||||||||||||||||||||||||||||    
T  3036534 ttttaataagttgaatacacaatttttaagataaagttgctactttaa 3036581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 536 - 579
Target Start/End: Original strand, 24696011 - 24696054
Alignment:
Q  536 tgaatctcggatcttgtatatattatgcattgtccctatcaact 579  Q
    |||||||||||||||| |||||||||||||||||| ||||||||    
T  24696011 tgaatctcggatcttgcatatattatgcattgtccatatcaact 24696054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 26886054 - 26886112
Alignment:
Q  543 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    ||||||||  |||| ||||||||||||| || ||||||| |||||||||||||||||||    
T  26886054 cggatcttacatattttatgcattgtccataccaactaagttaaactcacgaggacaaa 26886112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 543 - 599
Target Start/End: Complemental strand, 8837969 - 8837913
Alignment:
Q  543 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    |||| |||||||||||||||||||||||||||||||  | ||||  |||||||||||    
T  8837969 cggaccttgtatatattatgcattgtccctatcaaccgagttaagttcacgaggaca 8837913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 599
Target Start/End: Complemental strand, 6109213 - 6109162
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    ||||||||| ||||||||||||| |||||||| |  ||||||||||||||||    
T  6109213 cttgtatattttatgcattgtccatatcaactgatataaactcacgaggaca 6109162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 598
Target Start/End: Complemental strand, 6447238 - 6447183
Alignment:
Q  543 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 598  Q
    |||| |||| |||||||||||||||||| || ||||| | ||||||||||||||||    
T  6447238 cggaccttgcatatattatgcattgtccataccaactgagttaaactcacgaggac 6447183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 600
Target Start/End: Complemental strand, 13575340 - 13575281
Alignment:
Q  541 ctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 600  Q
    |||||| |||| |||| |||||||||||||||| ||||| |  |||||||||||||||||    
T  13575340 ctcggaacttgcatatgttatgcattgtccctaccaactgagctaaactcacgaggacaa 13575281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 595
Target Start/End: Original strand, 33482166 - 33482213
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgag 595  Q
    |||| ||| |||||||||||||||||||||||||  ||||||||||||    
T  33482166 cttgcataaattatgcattgtccctatcaactaagctaaactcacgag 33482213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 545 - 599
Target Start/End: Complemental strand, 8687913 - 8687859
Alignment:
Q  545 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    ||||||||||||||||| ||||||||||| ||| | | ||||| |||||||||||    
T  8687913 gatcttgtatatattatacattgtccctaccaattgagttaaattcacgaggaca 8687859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 598
Target Start/End: Complemental strand, 8982610 - 8982561
Alignment:
Q  549 ttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 598  Q
    |||||||||||||||||||| | ||  |||| ||||||||||||||||||    
T  8982610 ttgtatatattatgcattgttcatactaactgaattaaactcacgaggac 8982561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 593
Target Start/End: Complemental strand, 10601819 - 10601762
Alignment:
Q  536 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacg 593  Q
    |||||| || |||||| |||||||||||||||||| || ||||| |||||| ||||||    
T  10601819 tgaatcccgaatcttgcatatattatgcattgtccataccaactgaattaagctcacg 10601762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 601
Target Start/End: Complemental strand, 14303209 - 14303156
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    |||||||||||||| |||||||| || ||||| |  ||||||||||||||||||    
T  14303209 cttgtatatattatacattgtccataccaactgagctaaactcacgaggacaaa 14303156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 598
Target Start/End: Original strand, 32223901 - 32223946
Alignment:
Q  553 atatattatgcattgtccctatcaactaaattaaactcacgaggac 598  Q
    ||||||||||||||||| ||||||||| || ||| |||||||||||    
T  32223901 atatattatgcattgtctctatcaactgaactaagctcacgaggac 32223946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 601
Target Start/End: Complemental strand, 33620942 - 33620889
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    ||||||||||||||||||||||| ||  |||| | |||||||||||| ||||||    
T  33620942 cttgtatatattatgcattgtccatactaactgagttaaactcacgaagacaaa 33620889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 536 - 579
Target Start/End: Complemental strand, 2692271 - 2692228
Alignment:
Q  536 tgaatctcggatcttgtatatattatgcattgtccctatcaact 579  Q
    |||||||||||||||| |||||||||||||||||| ||||||||    
T  2692271 tgaatctcggatcttgcatatattatgcattgtccatatcaact 2692228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 554 - 598
Target Start/End: Complemental strand, 7927738 - 7927694
Alignment:
Q  554 tatattatgcattgtccctatcaactaaattaaactcacgaggac 598  Q
    |||||||||||||||||||||||||| || ||| |||||||||||    
T  7927738 tatattatgcattgtccctatcaactgaactaagctcacgaggac 7927694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 412 - 460
Target Start/End: Original strand, 28478663 - 28478711
Alignment:
Q  412 ttttaatatgttgaatgcataatttttaagataaagttgctactttaag 460  Q
    |||||||||||||||| || ||||| |||||||||||| ||||||||||    
T  28478663 ttttaatatgttgaatacacaatttctaagataaagtttctactttaag 28478711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 412 - 460
Target Start/End: Original strand, 29791118 - 29791166
Alignment:
Q  412 ttttaatatgttgaatgcataatttttaagataaagttgctactttaag 460  Q
    |||||||||||||||| || ||||| |||||||||||| ||||||||||    
T  29791118 ttttaatatgttgaatacacaatttctaagataaagtttctactttaag 29791166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 599
Target Start/End: Complemental strand, 12412321 - 12412270
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    |||| ||||||||||||||||| ||| ||||||| |||| ||||||||||||    
T  12412321 cttgcatatattatgcattgtctctaccaactaagttaagctcacgaggaca 12412270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 536 - 598
Target Start/End: Complemental strand, 8809362 - 8809300
Alignment:
Q  536 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 598  Q
    |||| ||||||||||| ||||||||||||||||   |||||| | || |||||||||||||||    
T  8809362 tgaacctcggatcttgcatatattatgcattgtttttatcaattgaactaaactcacgaggac 8809300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 598
Target Start/End: Original strand, 12336347 - 12336393
Alignment:
Q  552 tatatattatgcattgtccctatcaactaaattaaactcacgaggac 598  Q
    ||||||||||||||||||| ||| |||| | ||||||||||||||||    
T  12336347 tatatattatgcattgtccatattaactgagttaaactcacgaggac 12336393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 556 - 598
Target Start/End: Complemental strand, 21885023 - 21884981
Alignment:
Q  556 tattatgcattgtccctatcaactaaattaaactcacgaggac 598  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||    
T  21885023 tattatgcattgtccctatcaattaagttaaacttacgaggac 21884981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 546 - 599
Target Start/End: Complemental strand, 2445345 - 2445292
Alignment:
Q  546 atcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    ||||||||||||||||||||||| | |||||||| | |||| || |||||||||    
T  2445345 atcttgtatatattatgcattgttcatatcaactgagttaagcttacgaggaca 2445292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 546 - 599
Target Start/End: Original strand, 3373396 - 3373449
Alignment:
Q  546 atcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    |||||| |||||||||||||||||| |||||||| | ||||| |||||| ||||    
T  3373396 atcttgcatatattatgcattgtccatatcaactgagttaaattcacgaagaca 3373449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 601
Target Start/End: Complemental strand, 31971585 - 31971520
Alignment:
Q  536 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    |||| |||||| |||| |||||||||||||||||| || ||||| | |||| || |||||||||||    
T  31971585 tgaacctcggaccttgcatatattatgcattgtccttaccaactgagttaagcttacgaggacaaa 31971520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 548 - 599
Target Start/End: Complemental strand, 40446027 - 40445976
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    |||| |||||||||||||||||| |||||||| | |||||||||||||||||    
T  40446027 cttgcatatattatgcattgtccttatcaactgagttaaactcacgaggaca 40445976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 536 - 601
Target Start/End: Original strand, 1082224 - 1082289
Alignment:
Q  536 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||| || ||| |||| |||| ||||    
T  1082224 tgaatctcggaccttgtatatattatacattgtccctaccaactgaactaagctcatgagggcaaa 1082289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 543 - 603
Target Start/End: Original strand, 8545001 - 8545061
Alignment:
Q  543 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaaga 603  Q
    |||| |||| |||||||||||||||||| |||||||| | |||| |||||||| |||||||    
T  8545001 cggaccttgcatatattatgcattgtccttatcaactgagttaagctcacgagaacaaaga 8545061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 553 - 601
Target Start/End: Complemental strand, 10531579 - 10531531
Alignment:
Q  553 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    |||||||||||||||||| || |||||||| ||| ||||||||||||||    
T  10531579 atatattatgcattgtccatagcaactaaactaagctcacgaggacaaa 10531531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 541 - 595
Target Start/End: Complemental strand, 17046385 - 17046331
Alignment:
Q  541 ctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgag 595  Q
    ||||||||||| |||||||||||||||||| || ||||| | |||| ||||||||    
T  17046385 ctcggatcttgcatatattatgcattgtccataccaactgagttaagctcacgag 17046331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 553 - 599
Target Start/End: Complemental strand, 28447532 - 28447486
Alignment:
Q  553 atatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    |||||||||||||||||||||  |||| | |||||||||||||||||    
T  28447532 atatattatgcattgtccctactaactgagttaaactcacgaggaca 28447486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 548 - 606
Target Start/End: Complemental strand, 34436895 - 34436837
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaagacat 606  Q
    |||| ||||||||||||||||||||| ||||| |  ||| |||||||||||| ||||||    
T  34436895 cttgcatatattatgcattgtccctaccaactgagctaagctcacgaggacagagacat 34436837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 598
Target Start/End: Complemental strand, 4432155 - 4432110
Alignment:
Q  553 atatattatgcattgtccctatcaactaaattaaactcacgaggac 598  Q
    |||||||||||||||||| |||||||| | ||||||| ||||||||    
T  4432155 atatattatgcattgtccttatcaactgagttaaacttacgaggac 4432110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 581
Target Start/End: Original strand, 7861018 - 7861051
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaa 581  Q
    |||| |||||||||||||||||||||||||||||    
T  7861018 cttgcatatattatgcattgtccctatcaactaa 7861051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 601
Target Start/End: Original strand, 8885246 - 8885311
Alignment:
Q  536 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    ||||||||| | |||| |||| |||||||||||||| ||||| | | ||| |||||||||||||||    
T  8885246 tgaatctcgtaccttgcatattttatgcattgtcccaatcaaatgagttatactcacgaggacaaa 8885311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 598
Target Start/End: Original strand, 42663222 - 42663271
Alignment:
Q  549 ttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 598  Q
    |||||||||||||| ||||| |||| ||||| | ||||||||||||||||    
T  42663222 ttgtatatattatgtattgttcctaacaactgagttaaactcacgaggac 42663271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 553 - 600
Target Start/End: Complemental strand, 7827547 - 7827500
Alignment:
Q  553 atatattatgcattgtccctatcaactaaattaaactcacgaggacaa 600  Q
    |||||||||||||||||| |||||||| | ||||||||||||||||||    
T  7827547 atatattatgcattgtccatatcaactgagttaaactcacgaggacaa 7827500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 553 - 600
Target Start/End: Complemental strand, 7829935 - 7829888
Alignment:
Q  553 atatattatgcattgtccctatcaactaaattaaactcacgaggacaa 600  Q
    |||||||||||||||||| |||||||| | ||||||||||||||||||    
T  7829935 atatattatgcattgtccatatcaactgagttaaactcacgaggacaa 7829888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 548 - 599
Target Start/End: Complemental strand, 32753872 - 32753821
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    |||||||||||||||||||||||||||||||| | | || ||||||||||||    
T  32753872 cttgtatatattatgcattgtccctatcaactgagtcaagctcacgaggaca 32753821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 549 - 604
Target Start/End: Original strand, 48924337 - 48924392
Alignment:
Q  549 ttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaagac 604  Q
    ||||||||||||| ||||||||||| |||||||  |||||||||||||||| ||||    
T  48924337 ttgtatatattatacattgtccctaccaactaagctaaactcacgaggacagagac 48924392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 548 - 594
Target Start/End: Complemental strand, 48517715 - 48517669
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacga 594  Q
    ||||||||||||||||||||| |||||||||| | ||||||||||||    
T  48517715 cttgtatatattatgcattgttcctatcaactgagttaaactcacga 48517669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 593
Target Start/End: Original strand, 12976619 - 12976664
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacg 593  Q
    |||| ||||||||||||||||||||||||||| | |||||||||||    
T  12976619 cttgcatatattatgcattgtccctatcaactgagttaaactcacg 12976664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 548 - 600
Target Start/End: Complemental strand, 28093398 - 28093346
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 600  Q
    |||| |||||||||||||||||| || ||||| ||||||||||||| ||||||    
T  28093398 cttgcatatattatgcattgtccataccaactgaattaaactcacggggacaa 28093346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 7738718 - 7738660
Alignment:
Q  543 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    |||| |||| |||| |||||||||||||||| ||||| | |||| ||||||||||||||    
T  7738718 cggaccttgcatattttatgcattgtccctaccaactgagttaagctcacgaggacaaa 7738660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 543 - 593
Target Start/End: Original strand, 10922320 - 10922370
Alignment:
Q  543 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacg 593  Q
    ||||||||| ||||||||||||||||||||| ||||| | |||| ||||||    
T  10922320 cggatcttgcatatattatgcattgtccctaccaactgagttaagctcacg 10922370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 39869817 - 39869867
Alignment:
Q  541 ctcggatcttgtatatattatgcattgtccctatcaactaaattaaactca 591  Q
    |||||| ||||||||||||||||||||||| || ||||| | |||||||||    
T  39869817 ctcggaccttgtatatattatgcattgtccttaccaactgagttaaactca 39869867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 543 - 597
Target Start/End: Original strand, 46226089 - 46226143
Alignment:
Q  543 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgagga 597  Q
    |||| |||| ||||||||||||||||||||| ||| | | |||||||||||||||    
T  46226089 cggaccttgcatatattatgcattgtccctaccaattgagttaaactcacgagga 46226143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 598
Target Start/End: Original strand, 7464513 - 7464558
Alignment:
Q  553 atatattatgcattgtccctatcaactaaattaaactcacgaggac 598  Q
    ||||||||||||||||||||| ||||| | |||| |||||||||||    
T  7464513 atatattatgcattgtccctaccaactgagttaagctcacgaggac 7464558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 597
Target Start/End: Complemental strand, 8139759 - 8139710
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgagga 597  Q
    |||| |||||||||||||||||| || |||||||| ||| ||||||||||    
T  8139759 cttgcatatattatgcattgtccataccaactaaactaagctcacgagga 8139710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 601
Target Start/End: Complemental strand, 9598495 - 9598430
Alignment:
Q  536 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    ||||||||||| |||| |||| |||| ||||||||| | ||||| || ||| ||||||||||||||    
T  9598495 tgaatctcggaccttgcatattttatacattgtcccaaccaactgaactaagctcacgaggacaaa 9598430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 602
Target Start/End: Complemental strand, 22462351 - 22462302
Alignment:
Q  553 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaag 602  Q
    |||||||||||||||||| |||||||| | |||| |||||| ||||||||    
T  22462351 atatattatgcattgtccttatcaactgagttaagctcacggggacaaag 22462302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 602
Target Start/End: Complemental strand, 23332689 - 23332640
Alignment:
Q  553 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaag 602  Q
    |||||||||||||||| | |||||||||| ||||  ||||||||||||||    
T  23332689 atatattatgcattgttcatatcaactaagttaagttcacgaggacaaag 23332640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 601
Target Start/End: Original strand, 28052399 - 28052452
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 601  Q
    |||| ||| ||||||| ||||||||||||||| || ||||||||| ||||||||    
T  28052399 cttggataaattatgcgttgtccctatcaactgaactaaactcacaaggacaaa 28052452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 449
Target Start/End: Complemental strand, 31110669 - 31110632
Alignment:
Q  412 ttttaatatgttgaatgcataatttttaagataaagtt 449  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  31110669 ttttaatatctcgaatgcataatttttaagataaagtt 31110632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 545 - 598
Target Start/End: Complemental strand, 38388019 - 38387966
Alignment:
Q  545 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 598  Q
    ||||||| ||||||||||||||||| ||||||||| |  ||| |||||||||||    
T  38388019 gatcttgcatatattatgcattgtcactatcaactgagctaagctcacgaggac 38387966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 599
Target Start/End: Complemental strand, 22967 - 22904
Alignment:
Q  536 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 599  Q
    |||| |||||| |||| |||| ||||||||||| | ||||||||||| ||| ||||||||||||    
T  22967 tgaacctcggaccttgcatattttatgcattgttcatatcaactaaactaagctcacgaggaca 22904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 595
Target Start/End: Complemental strand, 4510 - 4463
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgag 595  Q
    |||| ||| |||||||||||||||||||||||||  ||||||||||||    
T  4510 cttgcataaattatgcattgtccctatcaactaagctaaactcacgag 4463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 548 - 598
Target Start/End: Complemental strand, 99081 - 99031
Alignment:
Q  548 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 598  Q
    |||| ||||||||||||||||||||||||||| | | || |||||||||||    
T  99081 cttgcatatattatgcattgtccctatcaactgagtcaagctcacgaggac 99031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 598
Target Start/End: Complemental strand, 63905 - 63856
Alignment:
Q  549 ttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 598  Q
    ||||||||||||| ||||||||||| ||||| |  |||||||||||||||    
T  63905 ttgtatatattatacattgtccctaccaactgagctaaactcacgaggac 63856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 598
Target Start/End: Complemental strand, 71237 - 71188
Alignment:
Q  549 ttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 598  Q
    ||||||||||||| ||||||||||| ||||| |  |||||||||||||||    
T  71237 ttgtatatattatacattgtccctaccaactgagctaaactcacgaggac 71188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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