View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3060R-Insertion-2 (Length: 380)

Name: NF3060R-Insertion-2
Description: NF3060R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3060R-Insertion-2
NF3060R-Insertion-2
[»] chr5 (4 HSPs)
chr5 (70-380)||(32726163-32726480)
chr5 (116-283)||(38925969-38926133)
chr5 (118-371)||(42882424-42882662)
chr5 (180-283)||(22545234-22545337)
[»] chr1 (5 HSPs)
chr1 (116-371)||(42958044-42958285)
chr1 (116-283)||(18506629-18506796)
chr1 (116-283)||(46352408-46352572)
chr1 (118-260)||(7486767-7486909)
chr1 (296-371)||(19193333-19193408)
[»] scaffold0159 (1 HSPs)
scaffold0159 (116-283)||(36330-36497)
[»] chr2 (5 HSPs)
chr2 (116-283)||(5782867-5783034)
chr2 (118-371)||(29468105-29468343)
chr2 (137-371)||(25417548-25417768)
chr2 (151-369)||(13363959-13364162)
chr2 (244-371)||(25546578-25546705)
[»] chr6 (12 HSPs)
chr6 (116-278)||(21392709-21392871)
chr6 (116-371)||(18767105-18767345)
chr6 (116-283)||(20025192-20025359)
chr6 (118-371)||(14463960-14464198)
chr6 (117-214)||(18785316-18785413)
chr6 (118-371)||(15906447-15906685)
chr6 (116-260)||(31569849-31569993)
chr6 (180-283)||(20881416-20881519)
chr6 (180-283)||(21683708-21683811)
chr6 (185-283)||(18715817-18715914)
chr6 (304-370)||(21392883-21392949)
chr6 (304-369)||(20025366-20025431)
[»] chr7 (2 HSPs)
chr7 (116-283)||(3569042-3569206)
chr7 (118-260)||(39702502-39702644)
[»] scaffold0214 (2 HSPs)
scaffold0214 (133-371)||(22177-22405)
scaffold0214 (116-260)||(1558-1702)
[»] chr8 (4 HSPs)
chr8 (118-366)||(7964300-7964533)
chr8 (133-371)||(8224199-8224422)
chr8 (133-371)||(22932509-22932732)
chr8 (163-363)||(43974108-43974298)
[»] chr4 (3 HSPs)
chr4 (118-262)||(19111464-19111608)
chr4 (137-371)||(43592995-43593220)
chr4 (296-366)||(52374734-52374804)
[»] scaffold0041 (1 HSPs)
scaffold0041 (133-371)||(31700-31922)
[»] scaffold0054 (1 HSPs)
scaffold0054 (138-278)||(50215-50351)
[»] chr3 (1 HSPs)
chr3 (116-260)||(6506530-6506674)
[»] scaffold0557 (1 HSPs)
scaffold0557 (118-371)||(6908-7145)
[»] scaffold0590 (1 HSPs)
scaffold0590 (304-370)||(9473-9539)
[»] scaffold0726 (1 HSPs)
scaffold0726 (187-239)||(5162-5214)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 70 - 380
Target Start/End: Original strand, 32726163 - 32726480
Alignment:
Q  70 attttaatcctaggatatggaaggagggttcatggatgnnnnnnnnggaaggggtggttgtgggcaggggctc-------ttgccttatatttttcaaag 162  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||| ||||||        |||||||||||||||| ||     
T  32726163 attttaatcctaggatatggaaggagggttcatggatgaaaaaaaaggaaggggtggttgtgggctggggctggggctctttgccttatatttttccaaa 32726262  T
Q  163 atttctcaaacaagaacatcacttatatgccccagtttaattatcattccacgttccatgttagattgactttttcagtcaaaaatttcgcaaagtatga 262  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32726263 atttctcaaacaagaacatcacttatatgccccagtttaattattattccacgttccatgttagattgactttttcagtcaaaaatttcgcaaagtatga 32726362  T
Q  263 ataagtaatatgactattgtgatgattaaaatatgtaaattttctttcactcgttttgaaatgtcttcgccctatgtatgacttggatgtgttatcaaag 362  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||| |    
T  32726363 ataagtaatatgactaatgtgatgattaaaatatgtaaactttctttcactctatttgaaatgtcttcgccccatgtatgacttggatgtgttatcaatg 32726462  T
Q  363 ttttgttctattggttag 380  Q
    |||||||||||| |||||    
T  32726463 ttttgttctatttgttag 32726480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 116 - 283
Target Start/End: Complemental strand, 38926133 - 38925969
Alignment:
Q  116 ggaaggggtggttgtgggcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacg 215  Q
    ||||| |||||||||  |||||||||||||| || ||||| |||||||||||| |||||||||||||||||||   |||||||||||||| ||||| ||     
T  38926133 ggaagtggtggttgtatgcaggggctcttgcgttttatttctcaaagatttctaaaacaagaacatcacttat---ccccagtttaattaacattcaact 38926037  T
Q  216 ttccatgttagattgactttttcagtcaaaaatttcgcaaagtatgaataagtaatatgactattgtg 283  Q
    | | |||||| ||||||||||||| |||||||| ||||||| ||||||||||| ||||||||| ||||    
T  38926036 tactatgttacattgactttttcaatcaaaaatatcgcaaattatgaataagtgatatgactaatgtg 38925969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 118 - 371
Target Start/End: Original strand, 42882424 - 42882662
Alignment:
Q  118 aaggggtggttgtgggcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacgtt 217  Q
    ||||||| |||||  ||||| ||||||||||| ||||| || || |||| |||||||| ||||||| |||||||| |||||||||||| |||||||| |     
T  42882424 aaggggtcgttgtatgcaggcgctcttgccttctatttctccaacatttatcaaacaacaacatcaattatatgctccagtttaattaacattccacttg 42882523  T
Q  218 ccatgttagattgactttttcagtcaaaaatttcgcaaagtatgaataagtaatatgactattgtgatgattaaaatatgtaaattttctttcactcgtt 317  Q
    | |||| | ||||||||||||| |||||||| |||||||||||| | |||| ||||||||              ||| ||||||| ||||||||||| ||    
T  42882524 ctatgtcacattgactttttcaatcaaaaatatcgcaaagtatg-agaagtgatatgact--------------aatgtgtaaatattctttcactcttt 42882608  T
Q  318 ttgaaatgtcttcgccctatgtatgacttggatgtgttatcaaagttttgttct 371  Q
    |||||||||||||| ||| || | ||| |  |||||||||||||||||||||||    
T  42882609 ttgaaatgtcttcgtcctttgaaagacataaatgtgttatcaaagttttgttct 42882662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 22545234 - 22545337
Alignment:
Q  180 atcacttatatgccccagtttaattatcattccacgttccatgttagattgactttttcagtcaaaaatttcgcaaagtatgaataagtaatatgactat 279  Q
    ||||||||||||| || ||||||||| |||||||  | | || ||| || |||||||||| |||||||| || |||||||||||||||| |||||||||     
T  22545234 atcacttatatgctccggtttaattaacattccatttgctatattacatcgactttttcaatcaaaaatatcccaaagtatgaataagtgatatgactaa 22545333  T
Q  280 tgtg 283  Q
    ||||    
T  22545334 tgtg 22545337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 6e-50; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 116 - 371
Target Start/End: Original strand, 42958044 - 42958285
Alignment:
Q  116 ggaaggggtggttgtgggcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacg 215  Q
    ||||||||||||||| |||||||||||||||||| ||||| || || |||||||||||||||||||||| |||||||||||||||||||| ||||||||     
T  42958044 ggaaggggtggttgtaggcaggggctcttgccttctatttctccaaaatttctcaaacaagaacatcacctatatgccccagtttaattaacattccact 42958143  T
Q  216 ttccatgttagattgactttttcagtcaaaaatttcgcaaagtatgaataagtaatatgactattgtgatgattaaaatatgtaaattttctttcactcg 315  Q
    | | |||||| ||||||| | ||| | |||||| | |||| |||||||||||| ||||||||              ||| ||||||  |||||||||||     
T  42958144 tactatgttacattgactatctcaataaaaaatattgcaatgtatgaataagtgatatgact--------------aatgtgtaaacattctttcactct 42958229  T
Q  316 ttttgaaatgtcttcgccctatgtatgacttggatgtgttatcaaagttttgttct 371  Q
    |||||||||||||||| ||| || | ||||||||||||||||||||||||||||||    
T  42958230 ttttgaaatgtcttcgtcctttgcaagacttggatgtgttatcaaagttttgttct 42958285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 116 - 283
Target Start/End: Complemental strand, 18506796 - 18506629
Alignment:
Q  116 ggaaggggtggttgtgggcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacg 215  Q
    ||||||||||||||| |||||  ||||||||||| ||||| || ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||     
T  18506796 ggaaggggtggttgtaggcagttgctcttgccttttatttctccaagatttctcaaacaagaacatcacttatatgcaccagtttaattaacattccact 18506697  T
Q  216 ttccatgttagattgactttttcagtcaaaaatttcgcaaagtatgaataagtaatatgactattgtg 283  Q
    | | |||||| ||||||||||||| | |||||| ||||||||||||||||||| ||||||||| ||||    
T  18506696 tgctatgttacattgactttttcattaaaaaatatcgcaaagtatgaataagtgatatgactaatgtg 18506629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 116 - 283
Target Start/End: Complemental strand, 46352572 - 46352408
Alignment:
Q  116 ggaaggggtggttgtgggcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacg 215  Q
    ||||| |||| ||||  ||||||||||||||||| ||||| |||||||||||| ||||||||| |||||||||   ||||| |||||||| ||||| ||     
T  46352572 ggaagtggtgattgtatgcaggggctcttgccttttatttctcaaagatttctaaaacaagaatatcacttat---ccccaatttaattaacattcaact 46352476  T
Q  216 ttccatgttagattgactttttcagtcaaaaatttcgcaaagtatgaataagtaatatgactattgtg 283  Q
    | | |||||| ||||||||||||| |||||||| || |||| ||||||||||| ||||||||| ||||    
T  46352475 tgctatgttacattgactttttcaatcaaaaatatcacaaattatgaataagtgatatgactaatgtg 46352408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 118 - 260
Target Start/End: Original strand, 7486767 - 7486909
Alignment:
Q  118 aaggggtggttgtgggcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacgtt 217  Q
    ||||||||||||| || ||||||||||||||| ||||  || || |||||||||||||||||||||| |||||  ||||  ||||||| |||||||| |     
T  7486767 aaggggtggttgtaggtaggggctcttgccttctattactccaaaatttctcaaacaagaacatcacatatatatcccaagttaattaacattccacttg 7486866  T
Q  218 ccatgttagattgactttttcagtcaaaaatttcgcaaagtat 260  Q
    | |||||| ||||||||||||| |||||||| | |||||||||    
T  7486867 ctatgttacattgactttttcaatcaaaaatattgcaaagtat 7486909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 371
Target Start/End: Original strand, 19193333 - 19193408
Alignment:
Q  296 tgtaaattttctttcactcgttttgaaatgtcttcgccctatgtatgacttggatgtgttatcaaagttttgttct 371  Q
    ||||||| |||||| |||| |||| ||||||||||| ||| || |  ||||||| ||||| |||||||||||||||    
T  19193333 tgtaaatattcttttactctttttaaaatgtcttcgtcctttgcaaaacttggacgtgttgtcaaagttttgttct 19193408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 116 - 283
Target Start/End: Original strand, 36330 - 36497
Alignment:
Q  116 ggaaggggtggttgtgggcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacg 215  Q
    ||||||||||||||| || |||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  36330 ggaaggggtggttgtaggtaggggctcttgcattctatttctccaagatttctcaaacaagaacatcacttatatgccccagtttaattaacattccact 36429  T
Q  216 ttccatgttagattgactttttcagtcaaaaatttcgcaaagtatgaataagtaatatgactattgtg 283  Q
    | | |||||| ||||||||||||| | |||||| | ||||||||||||||||| | ||||||| ||||    
T  36430 tgctatgttacattgactttttcaatgaaaaatattgcaaagtatgaataagtgacatgactaatgtg 36497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 116 - 283
Target Start/End: Original strand, 5782867 - 5783034
Alignment:
Q  116 ggaaggggtggttgtgggcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacg 215  Q
    ||||||||||||||| || |||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  5782867 ggaaggggtggttgtaggtaggggctcttgcattctatttctccaagatttctcaaacaagaacatcacttatatgccccagtttaattaacattccact 5782966  T
Q  216 ttccatgttagattgactttttcagtcaaaaatttcgcaaagtatgaataagtaatatgactattgtg 283  Q
    | | |||||| ||||||||||||| | |||||| | ||||||||||||||||| | ||||||| ||||    
T  5782967 tgctatgttacattgactttttcaatgaaaaatattgcaaagtatgaataagtgacatgactaatgtg 5783034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 118 - 371
Target Start/End: Original strand, 29468105 - 29468343
Alignment:
Q  118 aaggggtggttgtgggcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacgtt 217  Q
    ||||||| |||||  ||||| ||||||||||| ||||| || || ||||||||||||| ||||||| ||||||||||||||||||||| |||||||| |     
T  29468105 aaggggtcgttgtatgcaggcgctcttgccttctatttctccaacatttctcaaacaacaacatcaattatatgccccagtttaattaacattccacttg 29468204  T
Q  218 ccatgttagattgactttttcagtcaaaaatttcgcaaagtatgaataagtaatatgactattgtgatgattaaaatatgtaaattttctttcactcgtt 317  Q
    | |||| | ||||||||||||| |||||||| |||||||||||| | |||| ||||||||              ||| ||||||| ||||||||||| ||    
T  29468205 ctatgtcacattgactttttcaatcaaaaatatcgcaaagtatg-agaagtgatatgact--------------aatgtgtaaatattctttcactcttt 29468289  T
Q  318 ttgaaatgtcttcgccctatgtatgacttggatgtgttatcaaagttttgttct 371  Q
    |||||||||||||| | | || | ||| |  |||||||||||||||||||||||    
T  29468290 ttgaaatgtcttcgtcatttgaaagacataaatgtgttatcaaagttttgttct 29468343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 137 - 371
Target Start/End: Complemental strand, 25417768 - 25417548
Alignment:
Q  137 gggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacgttccatgttagattgac-ttt 235  Q
    ||||||||||||| |||| | |||| ||||||||||||| ||||||||||||||||||||| ||  ||| |||||||| | | |||||| ||  || |||    
T  25417768 gggctcttgccttttattctccaaa-atttctcaaacaataacatcacttatatgccccagattggttaacattccacttgctatgttacatcaactttt 25417670  T
Q  236 ttcagtcaaaaatttcgcaaagtatgaataagtaatatgactattgtgatgattaaaatatgtaaattttctttcactcgttttgaaatgtcttcgccct 335  Q
    |||| |||||||| || |||||||||||||||| ||||||||              ||| ||||||| ||||||||||| |||||||||||||||| |||    
T  25417669 ttcaatcaaaaatatctcaaagtatgaataagtgatatgact--------------aatgtgtaaatattctttcactctttttgaaatgtcttcgtcct 25417584  T
Q  336 atgtatgacttggatgtgttatcaaagttttgttct 371  Q
     || | ||||||||||||||||||||||||||||||    
T  25417583 ttgcaagacttggatgtgttatcaaagttttgttct 25417548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 151 - 369
Target Start/End: Original strand, 13363959 - 13364162
Alignment:
Q  151 tatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacgttccatgttagattgactttttcagtcaaaaattt 250  Q
    ||||| || ||||||| ||||||||||||| |||||||||||||||||| ||||| |||| ||| |   |||||| ||||||||||||| |||||||| |    
T  13363959 tatttctccaagatttgtcaaacaagaacaccacttatatgccccagtt-aattaacatttcacttgttatgttacattgactttttcaatcaaaaatat 13364057  T
Q  251 cgcaaagtatgaataagtaatatgactattgtgatgattaaaatatgtaaattttctttcactcgttttgaaatgtcttcgccctatgtatgacttggat 350  Q
    |||||||||||||||||| |||||| |              ||| ||||||| || |||||||| |||||||||||||||| ||| || | |||||||||    
T  13364058 cgcaaagtatgaataagtgatatgatt--------------aatgtgtaaatattttttcactctttttgaaatgtcttcgtcctttgaaagacttggat 13364143  T
Q  351 gtgttatcaaagttttgtt 369  Q
    |||||||||||||||||||    
T  13364144 gtgttatcaaagttttgtt 13364162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 371
Target Start/End: Complemental strand, 25546705 - 25546578
Alignment:
Q  244 aaaatttcgcaaagtatgaataagtaatatgactattgtgatgattaaaatatgtaaattttctttcactcgttttgaaatgtcttcgccctatgtatga 343  Q
    ||||| || ||||||||||| |||  ||||||||| ||||||||||| ||| ||||||  |||||||||||  ||||| ||||||| | ||||  || ||    
T  25546705 aaaatatctcaaagtatgaacaagagatatgactaatgtgatgattagaatgtgtaaacattctttcactctgtttgagatgtctttgtcctacataaga 25546606  T
Q  344 cttggatgtgttatcaaagttttgttct 371  Q
    | | |||||| |||||||||||||||||    
T  25546605 cattgatgtgctatcaaagttttgttct 25546578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 116 - 278
Target Start/End: Original strand, 21392709 - 21392871
Alignment:
Q  116 ggaaggggtggttgtgggcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacg 215  Q
    ||||||||||||||| |||||||||||||||||| ||||| || |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||     
T  21392709 ggaaggggtggttgtaggcaggggctcttgccttctatttctccaagatttctcaaacaagaacataacttatatgccccagtttaattaacattccact 21392808  T
Q  216 ttccatgttagattgactttttcagtcaaaaatttcgcaaagtatgaataagtaatatgacta 278  Q
    | | |||||| ||||| ||||||  | || ||| | ||||||||||||||||| | |||||||    
T  21392809 tgctatgttacattgaatttttccatgaagaatattgcaaagtatgaataagtgacatgacta 21392871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 116 - 371
Target Start/End: Original strand, 18767105 - 18767345
Alignment:
Q  116 ggaaggggtggttgtgggcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacg 215  Q
    ||||||||||||||| |||| ||||| || |||| ||||| || |||||||||||||||| || ||||||||||||| |||||||||||| |||||| |     
T  18767105 ggaaggggtggttgtaggcatgggctttt-ccttctatttctccaagatttctcaaacaacaatatcacttatatgctccagtttaattaacattcctct 18767203  T
Q  216 ttccatgttagattgactttttcagtcaaaaatttcgcaaagtatgaataagtaatatgactattgtgatgattaaaatatgtaaattttctttcactcg 315  Q
    | | |||||| |||||| |||||| |||||||| ||||||||||||||||||| ||||||||| |||||              |||  |||||||||||     
T  18767204 tgctatgttacattgaccttttcaatcaaaaatatcgcaaagtatgaataagtgatatgactaatgtga--------------aaacattctttcactct 18767289  T
Q  316 ttttgaaatgtcttcgccctatgtatgacttggatgtgttatcaaagttttgttct 371  Q
    |||||||||||||||| ||| || | |||||| ||||||||| |||||||||||||    
T  18767290 ttttgaaatgtcttcgtcctttgcaagacttgaatgtgttattaaagttttgttct 18767345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 116 - 283
Target Start/End: Original strand, 20025192 - 20025359
Alignment:
Q  116 ggaaggggtggttgtgggcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacg 215  Q
    ||||||||||||||| |||| ||||| || | |||||||| || ||||||||||||||||||| |||||||||||||||||||||||||| || || |      
T  20025192 ggaaggggtggttgtaggcatgggctttt-cattatatttctccaagatttctcaaacaagaatatcacttatatgccccagtttaattaacagtcaatt 20025290  T
Q  216 ttccatgttagattgactttttcagt-caaaaatttcgcaaagtatgaataagtaatatgactattgtg 283  Q
    | | |||||| ||||||||||||| |  |||||| ||||||| ||||||||||| ||||||||| ||||    
T  20025291 tgctatgttacattgactttttcaataaaaaaatatcgcaaactatgaataagtgatatgactaatgtg 20025359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 118 - 371
Target Start/End: Complemental strand, 14464198 - 14463960
Alignment:
Q  118 aaggggtggttgtgggcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacgtt 217  Q
    ||||||| |||||  ||||| ||||||||||| ||||| || |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| |     
T  14464198 aaggggttgttgtatgcaggtgctcttgccttctatttctccaagatttctcaaacaacaacatcaattatatgccccagtttaattaacattccacttg 14464099  T
Q  218 ccatgttagattgactttttcagtcaaaaatttcgcaaagtatgaataagtaatatgactattgtgatgattaaaatatgtaaattttctttcactcgtt 317  Q
    | |||| | |||| |||||||| | |||||| || ||||||||| | |||| ||||||||              ||| ||||||| ||||||||||| ||    
T  14464098 ctatgtcacattggctttttcaattaaaaatatctcaaagtatg-agaagtgatatgact--------------aatgtgtaaatattctttcactcttt 14464014  T
Q  318 ttgaaatgtcttcgccctatgtatgacttggatgtgttatcaaagttttgttct 371  Q
    |||||||||||||| ||| || | ||| |  || ||||||||||||||||||||    
T  14464013 ttgaaatgtcttcgtcctttgaaagacataaatatgttatcaaagttttgttct 14463960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 18785316 - 18785413
Alignment:
Q  117 gaaggggtggttgtgggcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccac 214  Q
    |||||||||||||| ||| |||||||||||||| ||||| || || ||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  18785316 gaaggggtggttgttggccggggctcttgccttctatttctccaaaatttctcaaacaagaacatcacttatatgcctcagtttaattaacattccac 18785413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 118 - 371
Target Start/End: Original strand, 15906447 - 15906685
Alignment:
Q  118 aaggggtggttgtgggcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacgtt 217  Q
    ||||||| |||||  ||||  ||||||||||| ||||| || || ||||| ||||||| ||| ||| ||||||||||||||||||||| |||||||| |     
T  15906447 aaggggtcgttgtatgcagccgctcttgccttctatttctccaacatttcgcaaacaacaacctcaattatatgccccagtttaattaacattccacttg 15906546  T
Q  218 ccatgttagattgactttttcagtcaaaaatttcgcaaagtatgaataagtaatatgactattgtgatgattaaaatatgtaaattttctttcactcgtt 317  Q
    | |||| | ||||||||||||| |||||||| ||| |||||||| | |||| ||||||||              ||| ||||||| ||||||||||| ||    
T  15906547 ctatgtcacattgactttttcaatcaaaaatatcgaaaagtatg-agaagttatatgact--------------aatgtgtaaatattctttcactcttt 15906631  T
Q  318 ttgaaatgtcttcgccctatgtatgacttggatgtgttatcaaagttttgttct 371  Q
    |||||||||||||| ||| || | ||| |  ||||||||||||| |||||||||    
T  15906632 ttgaaatgtcttcgtcctttgaaagacataaatgtgttatcaaaattttgttct 15906685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 116 - 260
Target Start/End: Complemental strand, 31569993 - 31569849
Alignment:
Q  116 ggaaggggtggttgtgggcaggggctcttgccttatattt-ttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccac 214  Q
    |||| |||||||||| || ||||||||||| ||| ||||| |||||| |||||||||||||||||||||| |||||  ||||  ||||||| ||||||||    
T  31569993 ggaatgggtggttgtaggtaggggctcttgtcttctatttcttcaaa-atttctcaaacaagaacatcacatatatatcccaagttaattaacattccac 31569895  T
Q  215 gttccatgttagattgactttttcagtcaaaaatttcgcaaagtat 260  Q
     | | |||||| ||||||||||||| |||||||| | |||||||||    
T  31569894 ttgctatgttacattgactttttcaatcaaaaatattgcaaagtat 31569849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 20881416 - 20881519
Alignment:
Q  180 atcacttatatgccccagtttaattatcattccacgttccatgttagattgactttttcagtcaaaaatttcgcaaagtatgaataagtaatatgactat 279  Q
    ||||||||||||| || ||||||||| |||||||  | | || ||| ||||||||||||| |||||||| || |||||||||||||||| |||||||||     
T  20881416 atcacttatatgctccggtttaattaacattccatttgctatattacattgactttttcaatcaaaaatatcccaaagtatgaataagtgatatgactaa 20881515  T
Q  280 tgtg 283  Q
    ||||    
T  20881516 tgtg 20881519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 283
Target Start/End: Complemental strand, 21683811 - 21683708
Alignment:
Q  180 atcacttatatgccccagtttaattatcattccacgttccatgttagattgactttttcagtcaaaaatttcgcaaagtatgaataagtaatatgactat 279  Q
    ||||||||||||| || ||||||||| |||||||  | | || ||| ||||||||||||| |||||||| || |||||||||||||||| |||||||||     
T  21683811 atcacttatatgctccggtttaattaacattccatttgctatattacattgactttttcaatcaaaaatatcccaaagtatgaataagtgatatgactaa 21683712  T
Q  280 tgtg 283  Q
    ||||    
T  21683711 tgtg 21683708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 283
Target Start/End: Complemental strand, 18715914 - 18715817
Alignment:
Q  185 ttatatgccccagtttaattatcattccacgttccatgttagattgactttttcagtcaaaaatttcgcaaagtatgaataagtaatatgactattgtg 283  Q
    ||||||||||||||||||||| |||||||| | | |||| | ||||||||||||| |||||||| ||| |||||||| | |||| ||||||||| ||||    
T  18715914 ttatatgccccagtttaattaacattccacttgctatgtcacattgactttttcaatcaaaaatatcgtaaagtatg-agaagtgatatgactaatgtg 18715817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 370
Target Start/End: Original strand, 21392883 - 21392949
Alignment:
Q  304 ttctttcactcgttttgaaatgtcttcgccctatgtatgacttggatgtgttatcaaagttttgttc 370  Q
    ||||||||||| |||||||||| ||||| ||| || | ||||| ||||||||||||||||| |||||    
T  21392883 ttctttcactctttttgaaatgccttcgtcctttgcaagacttagatgtgttatcaaagttctgttc 21392949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 369
Target Start/End: Original strand, 20025366 - 20025431
Alignment:
Q  304 ttctttcactcgttttgaaatgtcttcgccctatgtatgacttggatgtgttatcaaagttttgtt 369  Q
    |||||||| || |||||||||||||||| ||| || | ||||||||||| ||||||||| ||||||    
T  20025366 ttctttcattctttttgaaatgtcttcgtcctttgcaagacttggatgttttatcaaagctttgtt 20025431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 116 - 283
Target Start/End: Complemental strand, 3569206 - 3569042
Alignment:
Q  116 ggaaggggtggttgtgggcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacg 215  Q
    ||||| |||||||||  |||||||||||||| || ||||| |||||||||||| |||||||||||||||||||   |||||||||||||| ||||| ||     
T  3569206 ggaagtggtggttgtatgcaggggctcttgcgttttatttctcaaagatttctaaaacaagaacatcacttat---ccccagtttaattaacattcaact 3569110  T
Q  216 ttccatgttagattgactttttcagtcaaaaatttcgcaaagtatgaataagtaatatgactattgtg 283  Q
    | | |||||| ||||||||||||| |||||||| ||||||| ||||||||||| ||||||||| ||||    
T  3569109 tactatgttacattgactttttcaatcaaaaatatcgcaaattatgaataagtgatatgactaatgtg 3569042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 118 - 260
Target Start/End: Original strand, 39702502 - 39702644
Alignment:
Q  118 aaggggtggttgtgggcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacgtt 217  Q
    ||||| ||||||| || ||||||||||||||| ||||  || || |||||||||||||||||||||| |||||  ||||  ||||||| |||||||| |     
T  39702502 aagggatggttgtaggtaggggctcttgccttctattactccaaaatttctcaaacaagaacatcacatatatatcccaagttaattaacattccacttg 39702601  T
Q  218 ccatgttagattgactttttcagtcaaaaatttcgcaaagtat 260  Q
    | |||||| ||||||||||||| |||||||| | |||||||||    
T  39702602 ctatgttacattgactttttcaatcaaaaatattgcaaagtat 39702644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 133 - 371
Target Start/End: Complemental strand, 22405 - 22177
Alignment:
Q  133 gcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacgttccatgttagattgac 232  Q
    ||||||||||||||||| |||| | |||| ||||||||||||| ||||||||||||||||||||| ||  ||| |||||||| | | |||||| ||  ||    
T  22405 gcaggggctcttgccttttattctccaaa-atttctcaaacaataacatcacttatatgccccagattggttaacattccacttgctatgttatatcaac 22307  T
Q  233 tttttcagtcaaaaatttcgcaaagtatgaataagtaatatgactattgtgatgattaaaatatgtaaat-tttctttcactcgttttgaaatgtcttcg 331  Q
    ||||||| |||||||| || |||||||||||||||| |||||||||        ||||||   ||||||| ||| ||| |||| ||||||||||||||||    
T  22306 tttttcaatcaaaaatatctcaaagtatgaataagtgatatgacta--------attaaa--gtgtaaatattttttttactctttttgaaatgtcttcg 22217  T
Q  332 ccctatgtatgacttggatgtgttatcaaagttttgttct 371  Q
     ||| || | ||||||||||||||||||||||||||||||    
T  22216 tcctttgcaagacttggatgtgttatcaaagttttgttct 22177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 260
Target Start/End: Original strand, 1558 - 1702
Alignment:
Q  116 ggaaggggtggttgtgggcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacg 215  Q
    |||| |||||||||| || ||||||||||||||| ||||  || || |||| ||||||||||||||||| |||||  ||||  ||||||| ||||||||     
T  1558 ggaatgggtggttgtaggtaggggctcttgccttctattactccaaaatttttcaaacaagaacatcacatatatatcccaagttaattaacattccact 1657  T
Q  216 ttccatgttagattgactttttcagtcaaaaatttcgcaaagtat 260  Q
    | | |||||| ||||||||||| | |||||||| | |||||||||    
T  1658 tgctatgttacattgacttttttaatcaaaaatattgcaaagtat 1702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 118 - 366
Target Start/End: Original strand, 7964300 - 7964533
Alignment:
Q  118 aaggggtggttgtgggcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacgtt 217  Q
    ||||||| |||||  ||||| ||||||||||| ||||| || || ||||||||||||| ||||||| ||||||||||||||||||||| |||||||| |     
T  7964300 aaggggtcgttgtatgcaggcgctcttgccttctatttctccaacatttctcaaacaacaacatcaattatatgccccagtttaattaacattccacttg 7964399  T
Q  218 ccatgttagattgactttttcagtcaaaaatttcgcaaagtatgaataagtaatatgactattgtgatgattaaaatatgtaaattttctttcactcgtt 317  Q
    | |||||| ||||||||||||| |||||||| | |||||||||||  |||| ||||||||| ||||              ||||| ||||||||||| ||    
T  7964400 ctatgttacattgactttttcaatcaaaaatattgcaaagtatgag-aagtgatatgactaatgtg--------------taaatattctttcactcttt 7964484  T
Q  318 ttgaaatgtcttcgccctatgtatgacttggatgtgttatcaaagtttt 366  Q
    |||||||||||||| ||| || | ||| |  ||||||||||||||||||    
T  7964485 ttgaaatgtcttcgtcctttgaaagacataaatgtgttatcaaagtttt 7964533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 133 - 371
Target Start/End: Complemental strand, 8224422 - 8224199
Alignment:
Q  133 gcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacgttccatgttagattgac 232  Q
    ||||| ||||||||||| ||||| || || |||| |||||||| ||||||| ||||||||||||||||||||| |||||||| | | |||| | ||||||    
T  8224422 gcaggcgctcttgccttctatttctccaacatttatcaaacaacaacatcaattatatgccccagtttaattaacattccacttgctatgtcacattgac 8224323  T
Q  233 tttttcagtcaaaaatttcgcaaagtatgaataagtaatatgactattgtgatgattaaaatatgtaaattttctttcactcgttttgaaatgtcttcgc 332  Q
    ||||||| |||||||| |||||||||||| | |||| ||||||||              ||| ||||||| | ||||||||| ||||||||||||||||     
T  8224322 tttttcaatcaaaaatatcgcaaagtatg-agaagtgatatgact--------------aatgtgtaaatatgctttcactccttttgaaatgtcttcgt 8224238  T
Q  333 cctatgtatgacttggatgtgttatcaaagttttgttct 371  Q
    ||| || | ||| |  |||||||||||||||||||||||    
T  8224237 cctttgaaagacataaatgtgttatcaaagttttgttct 8224199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 133 - 371
Target Start/End: Complemental strand, 22932732 - 22932509
Alignment:
Q  133 gcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacgttccatgttagattgac 232  Q
    |||||| |||||||||| |||  | |||| ||||||||||||| ||||||||||||||||||| | ||  ||| |||||||| | | ||| || ||  ||    
T  22932732 gcagggactcttgccttttatcctccaaa-atttctcaaacaataacatcacttatatgccccggattggttaacattccacttgctatgctacatcaac 22932634  T
Q  233 tttttcagtcaaaaatttcgcaaagtatgaataagtaatatgactattgtgatgattaaaatatgtaaattttctttcactcgttttgaaatgtcttcgc 332  Q
    ||||||| |||||||| || |||||||||||||||| ||||||||              |||  |||||| ||||||||||| ||||||||||||||||     
T  22932633 tttttcaatcaaaaatatctcaaagtatgaataagtgatatgact--------------aatgcgtaaatattctttcactctttttgaaatgtcttcgt 22932548  T
Q  333 cctatgtatgacttggatgtgttatcaaagttttgttct 371  Q
    ||| || |  ||||||||||||||| |||||||||||||    
T  22932547 cctttgcaaaacttggatgtgttattaaagttttgttct 22932509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 163 - 363
Target Start/End: Original strand, 43974108 - 43974298
Alignment:
Q  163 atttctcaaacaagaacatcacttatatgcc-ccagtttaattatcattccacgttccat----gttagattgactttttcagtcaaaaatttcgcaaag 257  Q
    |||| ||||||||||||| |||||||||||| |||||||||||| |||| ||| | | ||    |||| ||||||||||||| |||||| | || |||||    
T  43974108 atttgtcaaacaagaacaccacttatatgcctccagtttaattaacatttcacttgctatatatgttacattgactttttcaatcaaaa-tatcacaaag 43974206  T
Q  258 tatgaataagtaatatgactattgtgatgattaaaatatgtaaattttctttcactcgttttgaaatgtcttcgccctatgtatgacttggatgtgttat 357  Q
    ||||||||||| ||||||||| ||||              ||||| ||||||||||| |||||||||||||| | ||| || | ||||||||||||||||    
T  43974207 tatgaataagtgatatgactaatgtg--------------taaatattctttcactctttttgaaatgtctttgtcctttgcaagacttggatgtgttat 43974292  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 118 - 262
Target Start/End: Original strand, 19111464 - 19111608
Alignment:
Q  118 aaggggtggttgtgggcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacgtt 217  Q
    ||||||| |||||  | ||| ||||||||||| ||||| || || ||||||||||||| ||||||| |||||||||||| |||||||| |||||||| |     
T  19111464 aaggggtcgttgtatgtaggcgctcttgccttctatttctccaacatttctcaaacaacaacatcaattatatgccccaatttaattaacattccacttg 19111563  T
Q  218 ccatgttagattgactttttcagtcaaaaatttcgcaaagtatga 262  Q
    | |||| | ||||||||||||| |||||||| |||||||||||||    
T  19111564 ctatgtcacattgactttttcaatcaaaaatatcgcaaagtatga 19111608  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 137 - 371
Target Start/End: Original strand, 43592995 - 43593220
Alignment:
Q  137 gggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacgttccatgttagattgactttt 236  Q
    |||||||| | || ||||| || ||||||||||||| ||||||||||||||||||| |||||||||||| |||||||| | | |||||| ||||||||||    
T  43592995 gggctcttccattttatttctccaagatttctcaaataagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttt 43593094  T
Q  237 tcagtc-----aaaaatttcgcaaagtatgaataagtaatatgactattgtgatgattaaaatatgtaaattttctttcactcgttttgaaatgtcttcg 331  Q
    |||  |     |||||  ||||||||||||||||| | ||||||||              ||| | ||||| || |||||||| ||||||||||||||||    
T  43593095 tcaaacaaaaaaaaaaactcgcaaagtatgaataactgatatgact--------------aatgtataaatattatttcactctttttgaaatgtcttcg 43593180  T
Q  332 ccctatgtatgacttggatgtgttatcaaagttttgttct 371  Q
     ||| || | || |||||||||||||||||||| ||||||    
T  43593181 tcctttgcaagatttggatgtgttatcaaagttctgttct 43593220  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 52374804 - 52374734
Alignment:
Q  296 tgtaaattttctttcactcgttttgaaatgtcttcgccctatgtatgacttggatgtgttatcaaagtttt 366  Q
    ||||||| ||||||||||| |||||||||||||||| ||| || | ||| |  ||||||||||||||||||    
T  52374804 tgtaaatattctttcactctttttgaaatgtcttcgtcctttgaaagacataaatgtgttatcaaagtttt 52374734  T

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Target: scaffold0041 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 133 - 371
Target Start/End: Original strand, 31700 - 31922
Alignment:
Q  133 gcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacgttccatgttagattgac 232  Q
    ||||||||||||||||| |||| | |||| || |||||||||| ||||||||||||||||||||| ||  ||| |||||||| | | |||||| ||  ||    
T  31700 gcaggggctcttgccttttattctccaaa-atatctcaaacaataacatcacttatatgccccagattggttaacattccacttgctatgttacatcaac 31798  T
Q  233 tttttcagtcaaaaatttcgcaaagtatgaataagtaatatgactattgtgatgattaaaatatgtaaattttctttcactcgttttgaaatgtcttcgc 332  Q
    ||||||| || ||||| || |||||||||||||||| ||||||||              ||| ||||||| || |||||||| ||||||||||||||||     
T  31799 tttttcaatc-aaaatatctcaaagtatgaataagtgatatgact--------------aatgtgtaaatattttttcactctttttgaaatgtcttcgt 31883  T
Q  333 cctatgtatgacttggatgtgttatcaaagttttgttct 371  Q
    ||| || | |||||| |||||||||||||||||||||||    
T  31884 cctttgcaagacttgaatgtgttatcaaagttttgttct 31922  T

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Target: scaffold0054 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 50351 - 50215
Alignment:
Q  138 ggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacgttccatgttagattgacttttt 237  Q
    |||||||||||| ||||| |||||||||||| ||||||||| |||||||||   |||||||||||||| ||||| || | | |||||| |||||||||||    
T  50351 ggctcttgccttttatttctcaaagatttctaaaacaagaatatcacttat---ccccagtttaattaacattcaacttgctatgttacattgacttttt 50255  T
Q  238 cagtcaaaaatttcgcaaagtatgaataagtaatatgacta 278  Q
    || | |||||| ||||||| ||||||||||| |||||||||    
T  50254 caat-aaaaatatcgcaaattatgaataagtgatatgacta 50215  T

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Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 116 - 260
Target Start/End: Complemental strand, 6506674 - 6506530
Alignment:
Q  116 ggaaggggtggttgtgggcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacg 215  Q
    |||| |||||||||| || ||||||||||||||| ||||| || || |||||||||||||||||||||| |||||  ||||  ||||||| ||||||||     
T  6506674 ggaatgggtggttgtaggtaggggctcttgccttctatttctccaaaatttctcaaacaagaacatcacatatatatcccaagttaattaacattccact 6506575  T
Q  216 ttccatgttagattgactttttcagtcaaaaatttcgcaaagtat 260  Q
    | | |||||| ||||||||||||| | |||||| | |||||||||    
T  6506574 tgctatgttacattgactttttcaataaaaaatattgcaaagtat 6506530  T

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Target: scaffold0557 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 118 - 371
Target Start/End: Complemental strand, 7145 - 6908
Alignment:
Q  118 aaggggtggttgtgggcaggggctcttgccttatatttttcaaagatttctcaaacaagaacatcacttatatgccccagtttaattatcattccacgtt 217  Q
    ||||||| |||||  ||||| ||||||||||| ||||| || || ||||||||||||| ||||||| ||| |||||| |||||||||| ||||| || |     
T  7145 aaggggtcgttgtatgcaggcgctcttgccttctatttctccaacatttctcaaacaacaacatcaattaaatgccctagtttaattaacattctacttg 7046  T
Q  218 ccatgttagattgactttttcagtcaaaaatttcgcaaagtatgaataagtaatatgactattgtgatgattaaaatatgtaaattttctttcactcgtt 317  Q
    | |||| | |||||  |||||| |||||||| | |||||||||| | |||| ||||||||              ||| ||||||| ||||||||||| ||    
T  7045 ctatgtcacattga-attttcaatcaaaaatattgcaaagtatg-agaagtgatatgact--------------aatgtgtaaatattctttcactcttt 6962  T
Q  318 ttgaaatgtcttcgccctatgtatgacttggatgtgttatcaaagttttgttct 371  Q
    || ||||||||||| ||| || | ||| |  |||||||||||||||||||||||    
T  6961 tttaaatgtcttcgtcctttgaaagacataaatgtgttatcaaagttttgttct 6908  T

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Target: scaffold0590 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 370
Target Start/End: Complemental strand, 9539 - 9473
Alignment:
Q  304 ttctttcactcgttttgaaatgtcttcgccctatgtatgacttggatgtgttatcaaagttttgttc 370  Q
    ||||||||||| |||||||||| ||||| ||| || | ||||| |||||||||||||||||||||||    
T  9539 ttctttcactctttttgaaatgccttcgtcctttgcaagacttagatgtgttatcaaagttttgttc 9473  T

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Target: scaffold0726 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 5162 - 5214
Alignment:
Q  187 atatgccccagtttaattatcattccacgttccatgttagattgactttttca 239  Q
    ||||||||||||||||||| |||||||| | | |||| | |||||||||||||    
T  5162 atatgccccagtttaattaacattccacttgctatgtcacattgactttttca 5214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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