View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060R-Insertion-24 (Length: 96)
Name: NF3060R-Insertion-24
Description: NF3060R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060R-Insertion-24 |
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| [»] chr6 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 73; Significance: 6e-34; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 6e-34
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 7971401 - 7971313
Alignment:
| Q |
8 |
actaggaaatgtacaatatagtagcaaagctacaactactgcaggatctgtctttgatttctttaatgcactcggcgctgttgcatttg |
96 |
Q |
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| T |
7971401 |
actagaaaatgtacaatatagtagcaaagctacaactactgcaggatctgtctttaatttctttaatgcacttggctctgttgcatttg |
7971313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 6e-34
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 8042312 - 8042400
Alignment:
| Q |
8 |
actaggaaatgtacaatatagtagcaaagctacaactactgcaggatctgtctttgatttctttaatgcactcggcgctgttgcatttg |
96 |
Q |
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| T |
8042312 |
actagaaaatgtacaatatagtagcaaagctacaactactgcaggatctgtcttttatttctttaatgcacttggctctgttgcatttg |
8042400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 8032414 - 8032496
Alignment:
| Q |
14 |
aaatgtacaatatagtagcaaagctacaactactgcaggatctgtctttgatttctttaatgcactcggcgctgttgcatttg |
96 |
Q |
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| T |
8032414 |
aaatgtacaatatagtagcaaggctacaaatactgcagaatcagtctttaatttctttaatgcactcggctctgttgcatttg |
8032496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 41381832 - 41381750
Alignment:
| Q |
14 |
aaatgtacaatatagtagcaaagctacaactactgcaggatctgtctttgatttctttaatgcactcggcgctgttgcatttg |
96 |
Q |
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| T |
41381832 |
aaatgtacaatatactagcaaagccacgactagtgcaggatctgtctttaatttctttaatgcacttggttctgttgcttttg |
41381750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 2693 - 2628
Alignment:
| Q |
14 |
aaatgtacaatatagtagcaaagctacaactactgcaggatctgtctttgatttctttaatgcact |
79 |
Q |
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|||||||||||||||||| || ||||| || | |||| ||| |||||| |||||||||||||||| |
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| T |
2693 |
aaatgtacaatatagtagaaacgctacgacggccgcagaatcagtctttaatttctttaatgcact |
2628 |
T |
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