View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060R-Insertion-3 (Length: 516)
Name: NF3060R-Insertion-3
Description: NF3060R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060R-Insertion-3 |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 380
Target Start/End: Complemental strand, 32680010 - 32679640
Alignment:
| Q |
8 |
agttttttagtgtgaactgccagaatgggaatgttgaagattaaacatgcgtgttttgtatgtgtgtgtttaacagcgagagtttgtatgaagatgagga |
107 |
Q |
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| T |
32680010 |
agttttttagtgtgaactgccagaatgggaatgttgaagattaaacatgcgtgttttgtatgtgtgt--ttaacagcgagagtttgtatgaagacgagga |
32679913 |
T |
|
| Q |
108 |
gtttgatcattaccaaaggcaactcgctgcactacttgtatagaaggtattataattccgctcattatttgaactgtcatgtgttctattgaaaactgtg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32679912 |
gtttgatcattaccaaaggcaactcgctgcactacttgtatataaggtattataattccgctcattatttgaactgtcatgtgttctattgaaaactgtg |
32679813 |
T |
|
| Q |
208 |
cgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttagatgatatttgagataacaaacaagtattgttggt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
32679812 |
cgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttaggatgtgttttacatgatatttaagataacaaacaagtattgttggt |
32679713 |
T |
|
| Q |
308 |
tttcatcctttgtgggttgtacctgacttctaaactttttcatcctttatggttgtacctgacttctaaacct |
380 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32679712 |
tttcatcctttatgggttgtacctgacttctaaaccttttcatcctttatggttgtacctgacttctaaacct |
32679640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 32679676 - 32679630
Alignment:
| Q |
307 |
ttttcatcctttgtgggttgtacctgacttctaaactttttcatcctt |
354 |
Q |
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| T |
32679676 |
ttttcatcctttatgg-ttgtacctgacttctaaaccttttcatcctt |
32679630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 48 - 318
Target Start/End: Complemental strand, 28136291 - 28136025
Alignment:
| Q |
48 |
ttaaacatgcgtgttttgtatgtgtgtgtttaacagcgagagtttgtatgaagatgaggagtttgatcattaccaaaggcaactcgctgcactacttgta |
147 |
Q |
| |
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||||||||| ||| ||||||||| |||||| || || ||||||||||| ||||| |||| |||||||| ||||||||||||| || |||||||| ||| |
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| T |
28136291 |
ttaaacatgtgtggtttgtatgtatgtgttaaatagtgagagtttgtacgaagaggaggcctttgatcagcaccaaaggcaacttgccgcactactcgta |
28136192 |
T |
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| Q |
148 |
tagaaggtattataattccgctcattatttgaactgtcatgtgttctattgaaaactgtgcgatgct-atttttgcatatatggagtctctttcttcatg |
246 |
Q |
| |
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| T |
28136191 |
tccaaggtagtattgttctgctcattatttgaactgtcacatgttctattggtgactatgcgatgctgttttttgcatatatggagtctctttcttcatg |
28136092 |
T |
|
| Q |
247 |
tagctaagctgttatgatgtgttttagatgatatttgagataacaaacaagtattgttggttttcatccttt |
318 |
Q |
| |
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| T |
28136091 |
t-----agctgttatgatgtgttttacatgatatttgagataacaaataagtattgttggctttcatccttt |
28136025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 427 - 516
Target Start/End: Complemental strand, 28135930 - 28135840
Alignment:
| Q |
427 |
tggtttgtgttttggc-atctgattttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgc |
516 |
Q |
| |
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||||||||||||| | |||| ||||| ||| ||||||| ||||||||| |||||||||||||| ||||||||||| ||| |||||||||| |
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| T |
28135930 |
tggtttgtgtttttactatctaattttttttcgctcctttatcttaggtattttattacttgggtgagctgaatgactcactatcctatgc |
28135840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 425
Target Start/End: Complemental strand, 28136035 - 28135955
Alignment:
| Q |
345 |
tttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatccacatattattattc |
425 |
Q |
| |
|
||||||||||| | ||||||| | |||||||||| |||||| ||| ||||| |||||||||||||| |||||||||||| |
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| T |
28136035 |
tttcatccttttttattgtacccggcttctaaaccaatcaccagagtccttatgttttttcatatccctatattattattc |
28135955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 79 - 290
Target Start/End: Original strand, 44806585 - 44806795
Alignment:
| Q |
79 |
aacagcgagagtttgtatgaagatgaggagtttgatcattaccaaaggcaactcgctgcactacttgtatagaaggtattataattccgctcattatttg |
178 |
Q |
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||||| ||||||||||| |||||||||||||||||||| | ||||||||||| || ||| ||||||||| |||||| | || ||| |||||||||||| |
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| T |
44806585 |
aacagtgagagtttgtacgaagatgaggagtttgatcagcatcaaaggcaacttgccgcattacttgtatcaaaggtagtgta-ttctgctcattatttg |
44806683 |
T |
|
| Q |
179 |
aactgtcatgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttagatgat |
278 |
Q |
| |
|
|| ||||| ||||||||||| |||||||||||||| |||||||| ||| |||||||||||| ||| ||||||||||||||||||||||||||| ||||| |
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| T |
44806684 |
aattgtcacatgttctattgataactgtgcgatgctgtttttgcacatacggagtctctttcgtcaagtagctaagctgttatgatgtgttttacatgat |
44806783 |
T |
|
| Q |
279 |
atttgagataac |
290 |
Q |
| |
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|||||||||||| |
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| T |
44806784 |
atttgagataac |
44806795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 427 - 516
Target Start/End: Original strand, 44806913 - 44807002
Alignment:
| Q |
427 |
tggtttgtgttttggcatctgattttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgc |
516 |
Q |
| |
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|||||||| |||| | |||||||||| || ||||||| |||||||||||||||||||||||||||| ||||||| ||| |||||||||| |
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| T |
44806913 |
tggtttgtattttagtatctgatttttcttcgctcctttatcttaggtcttttattacttgggcgagttgaatgactcactatcctatgc |
44807002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 44806806 - 44806873
Alignment:
| Q |
345 |
tttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatcca |
412 |
Q |
| |
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|||||| |||| || ||||||| | |||||||||| |||||| |||| |||||||||||||||||||| |
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| T |
44806806 |
tttcattctttttgattgtacccggcttctaaaccaatcaccagaggacttaagttttttcatatcca |
44806873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 177 - 342
Target Start/End: Original strand, 2230444 - 2230608
Alignment:
| Q |
177 |
tgaactgtcatgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttagatg |
276 |
Q |
| |
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|||||||||| ||||||||||| ||| | |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
2230444 |
tgaactgtcacatgttctattgataaccgagcgatgctgtttttgcatatatggagtctctttcttcatgtggctaagctgttatgatgtgttttacatg |
2230543 |
T |
|
| Q |
277 |
atatttgagataacaaacaagtattgttggttttcatcctttgtgggttgtacctgacttctaaac |
342 |
Q |
| |
|
|||||||||||| |||| || |||| | || |||||||||| | | ||||||||| ||||||||| |
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| T |
2230544 |
atatttgagatagcaaataaatattttcggccttcatccttt-ttgattgtacctggcttctaaac |
2230608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 346 - 425
Target Start/End: Original strand, 2230576 - 2230655
Alignment:
| Q |
346 |
ttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatccacatattattattc |
425 |
Q |
| |
|
|||||||||| || ||||||||| |||||||||| |||||| ||||||||||||||||| ||||||| |||||||||||| |
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|
| T |
2230576 |
ttcatcctttttgattgtacctggcttctaaaccaatcaccagaggccttaagtttttttatatccatatattattattc |
2230655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 449 - 516
Target Start/End: Original strand, 2230704 - 2230771
Alignment:
| Q |
449 |
ttttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgc |
516 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||| |||||||||||||||||||||| ||| |||||||||| |
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| T |
2230704 |
ttttttttcgctcctttatcttaggtctttaattacttgggcgagctgaatgactcactatcctatgc |
2230771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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