View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3060R-Insertion-31 (Length: 238)
Name: NF3060R-Insertion-31
Description: NF3060R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060R-Insertion-31 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 60 - 238
Target Start/End: Original strand, 40879689 - 40879862
Alignment:
| Q |
60 |
tctcacaatatattggaatgaataaacttgatcctttcaatccaaaagtgaattctctcctttctctttaatacttcttcttattctaaaaacaataaac |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40879689 |
tctcacaatatattggaatgaataaacttgatcctttcaatccaaaagtgaattctctcctttctctttaatacttcttcttattctaaaaacaataaac |
40879788 |
T |
|
| Q |
160 |
ttgttccaacatagaagatttattgaaattaaagcaacaacttctgcttcacctatctcttcatgcatcacaactcctt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40879789 |
ttgttccaacatagaagatttattgaaa-----gcgacaacttttgcttcacctatctcttcatgcatcacaactcctt |
40879862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 40879580 - 40879635
Alignment:
| Q |
9 |
gtttcacctctttcacaatttggtggcctcttggagtaattttatcacacttctca |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40879580 |
gtttcacctctttcacaatttggtggcctcttggagtaattttatcacacttctca |
40879635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University