View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3060R-Insertion-35 (Length: 292)

Name: NF3060R-Insertion-35
Description: NF3060R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3060R-Insertion-35
NF3060R-Insertion-35
[»] scaffold0238 (1 HSPs)
scaffold0238 (9-222)||(12618-12831)
[»] chr2 (2 HSPs)
chr2 (9-222)||(10452776-10452995)
chr2 (9-61)||(14455914-14455966)
[»] chr1 (2 HSPs)
chr1 (9-222)||(12604113-12604314)
chr1 (35-99)||(23261413-23261477)
[»] chr6 (1 HSPs)
chr6 (9-64)||(21547848-21547903)
[»] chr7 (1 HSPs)
chr7 (9-73)||(39741872-39741936)
[»] chr5 (1 HSPs)
chr5 (142-222)||(33619228-33619307)
[»] chr4 (2 HSPs)
chr4 (9-73)||(6898330-6898394)
chr4 (35-99)||(56478470-56478534)


Alignment Details
Target: scaffold0238 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 12618 - 12831
Alignment:
Q  9 tctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttcgttggcaatttgaccgacgattccatcattagtta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  12618 tctttctcaatttcttattcaattcgttctttctaaatttgatgttgattttgattgacaatttcgttggcaatgtgaccgacgattccatcattagtta 12717  T
Q  109 tactatttgaatttgattttggattttaattcatttctactttaggttttagattgcatcatgtgccatgttgcaatggatgggaggatcaaggcttaaa 208  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12718 tactatttgaatttgattttggattttgattcatttctactttaggttttagattgcatcatgtgccatgttgcaatggatgggaggatcaaggcttaaa 12817  T
Q  209 gctacggcagtgag 222  Q
    ||||||||||||||    
T  12818 gctacggcagtgag 12831  T

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Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 10452776 - 10452995
Alignment:
Q  9 tctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttcgttggcaatttgaccgacgattccatcattagtta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||  |||||||||||||||||||    
T  10452776 tctttctcaatttcttattcaattcgttctttctaaatttgatatcgattttgattgacaatttcgttggcaatttgactaacgattccatcattagtta 10452875  T
Q  109 tactatttgaa------tttgattttggattttaattcatttctactttaggttttagattgcatcatgtgccatgttgcaatggatgggaggatcaagg 202  Q
    |||||||||||      |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10452876 tactatttgaattttattttgattttggatttttattcatttctactttaggttttagattgcatcatgtgccatgttacaatggatgggaggatcaagg 10452975  T
Q  203 cttaaagctacggcagtgag 222  Q
    |||||||||||| |||||||    
T  10452976 cttaaagctacgacagtgag 10452995  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 14455966 - 14455914
Alignment:
Q  9 tctttctcaatttcttattcaattcgttctttctaaatttgatattgattttg 61  Q
    ||||||||||||||||| |||||| |||||||||  |||| |||| |||||||    
T  14455966 tctttctcaatttcttactcaatttgttctttctcgatttaatatcgattttg 14455914  T

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Target: chr1 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 12604314 - 12604113
Alignment:
Q  9 tctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttcgttggcaatttgaccgacgattccatcattagtta 108  Q
    |||||||||||||||||||||||||||||||||||||||||||            || ||||||||||||||||||||||||| ||||||||||||||||    
T  12604314 tctttctcaatttcttattcaattcgttctttctaaatttgat------------tgacaatttcgttggcaatttgaccgaccattccatcattagtta 12604227  T
Q  109 tactatttgaatttgattttggattttaattcatttctactttaggttttagattgcatcatgtgccatgttgcaatggatgggaggatcaaggcttaaa 208  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12604226 tactatttgaatttgattttggattttgattcatttctactttaggttttagattgcatcatgtgccatgttgcaatggatgggaggatcaaggcttaaa 12604127  T
Q  209 gctacggcagtgag 222  Q
    ||||||||||||||    
T  12604126 gctacggcagtgag 12604113  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 23261413 - 23261477
Alignment:
Q  35 ttctttctaaatttgatattgattttgattgtcaatttcgttggcaatttgaccgacgattccat 99  Q
    |||||||||||||||| || ||||||||||  | ||||| || |||||||||| ||| |||||||    
T  23261413 ttctttctaaatttgacatcgattttgattaacgatttcatttgcaatttgactgacaattccat 23261477  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 21547903 - 21547848
Alignment:
Q  9 tctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgatt 64  Q
    ||||||||||||||||||||| ||  |||||||| |||||||||| ||||||||||    
T  21547903 tctttctcaatttcttattcagttttttctttctcaatttgatatcgattttgatt 21547848  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 39741936 - 39741872
Alignment:
Q  9 tctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttc 73  Q
    ||||||||||||||| ||||||||  ||||||||  |||||||||  |||||||||  |||||||    
T  39741936 tctttctcaatttctcattcaatttcttctttctcgatttgatatcaattttgatttacaatttc 39741872  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 33619307 - 33619228
Alignment:
Q  142 tttctactttaggttttagattgcatcatgtgccatgttgcaatggatgggaggatcaaggcttaaagctacggcagtgag 222  Q
    |||||||| ||||||||||| | |||||||| |||||||| | | ||||||||||| |||||| |||| ||  ||||||||    
T  33619307 tttctactataggttttagaatccatcatgtaccatgttgtagttgatgggaggat-aaggctgaaagttagtgcagtgag 33619228  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 6898394 - 6898330
Alignment:
Q  9 tctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttc 73  Q
    ||||||||||||||| ||||||||  ||||||||  |||||||||  |||||||||  |||||||    
T  6898394 tctttctcaatttctcattcaatttcttctttctcgatttgatatcaattttgatttacaatttc 6898330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 56478534 - 56478470
Alignment:
Q  35 ttctttctaaatttgatattgattttgattgtcaatttcgttggcaatttgaccgacgattccat 99  Q
    |||||||||||||||| || ||||||||||  | ||||| || |||||||||| ||| |||||||    
T  56478534 ttctttctaaatttgacatcgattttgattaacgatttcatttgcaatttgactgacaattccat 56478470  T

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