View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060R-Insertion-36 (Length: 303)
Name: NF3060R-Insertion-36
Description: NF3060R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060R-Insertion-36 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 7 - 303
Target Start/End: Original strand, 6145632 - 6145929
Alignment:
| Q |
7 |
cacttttcctcctccttttcatcttcatcaagacaatgtcaacatgtcttcatcacaagaaacattttgggatcatttcctgatgaatgaagatgatgat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6145632 |
cacttttcctcctccttttcatcttcatcaagacaatgtcaacatgtcttcatcacaagaaacattttgggatcatttcctgatgaatgaagatgatgat |
6145731 |
T |
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| Q |
107 |
ataaatgcaggaccaagtagtgctacaaatcgg-ccgaaattaatagccctccacatgttaggttattcctagaaggtggtgtgaatcaaattccttctc |
205 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6145732 |
ataaatgcaggaccaagtagtgctacaaatcggtccgaaattaatagccctccacatgttaggttattcctagaaggtcgtgtgaatcaaattccttctc |
6145831 |
T |
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| Q |
206 |
caacaattgttcctgtgtggcccagtggttatgtaccaccgcaacaaacaataatgacttcagacgcttcaccgagtaataattaccggctaaaccct |
303 |
Q |
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| T |
6145832 |
caacaattgttcctgtgtggcccagtagttatgtaccaccgcaacaaacaataatgacttcagacgcttcaccgagtaataattaccggctaaaccct |
6145929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 7 - 303
Target Start/End: Original strand, 6126213 - 6126513
Alignment:
| Q |
7 |
cacttttcctcctccttttcatcttcatcaagacaatgtcaacatgtcttcatcac---aagaaacattttgggatcatttcctgatgaatgaagatgat |
103 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||| |||||| | || ||||||||||||||||| | ||| ||||| ||||||||| | |
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| T |
6126213 |
cactcttcctcctccttttcatattcatcaagacaatgtcaacacgtcttctttaccgcaagaaacattttgggataagttcttgatgtatgaagatgct |
6126312 |
T |
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| Q |
104 |
gatataaatgcaggaccaagtagtgctacaaatcggc-cgaaattaatagccctccacatgttaggttattcctagaaggtggtgtgaatcaaattcctt |
202 |
Q |
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| T |
6126313 |
gatatagatgcaggaccaagtagtgctactactcagttcgaaattaatagccctccacatgttaggttattctcagaaggtcgtgtgaatcaaattgctt |
6126412 |
T |
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| Q |
203 |
ctccaacaattgttcctgtgtggcccagtggttatgtaccaccgcaacaaacaataatgacttcagacgcttcaccgagtaataattaccggctaaaccc |
302 |
Q |
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| T |
6126413 |
caccaaaaattgctcatgtgtggcccagtagttctataccaccacaacaaccaataacaacttcagacgcttcgctgagtaattataaccggctaaaccc |
6126512 |
T |
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| Q |
303 |
t |
303 |
Q |
| |
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| T |
6126513 |
t |
6126513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 290
Target Start/End: Original strand, 34283569 - 34283700
Alignment:
| Q |
159 |
acatgttaggttattcctagaaggtggtgtgaatcaaattccttctccaacaattgttcctgtgtggcccagtggttatgtaccaccgcaacaaacaata |
258 |
Q |
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||||||||||||||| ||||||| |||||||| ||||||||||||||| ||| ||| ||||||||| | | ||| ||||||||| | |||| ||||| |
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| T |
34283569 |
acatgttaggttattgacagaaggtcttgtgaatcgaattccttctccaactatttttcatgtgtggcctattagttttgtaccaccacgacaaccaata |
34283668 |
T |
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| Q |
259 |
atgacttcagacgcttcaccgagtaataatta |
290 |
Q |
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| T |
34283669 |
acgacttcagatcctccatcgagtaattatta |
34283700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 33731503 - 33731372
Alignment:
| Q |
7 |
cacttttcctcctccttttcatcttcatcaagacaatgtcaa---catgtcttcatcaca---agaaacattttgggatcatttcctgatgaatgaagat |
100 |
Q |
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|||| |||||||||||||||||| | |||||||||||||||| ||||||||| | || | ||||||||||||||||||| | ||| |||||||| |
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| T |
33731503 |
cactcttcctcctccttttcatccttatcaagacaatgtcaataacatgtcttctttacctacaacaacattttgggatcatttcatcatggatgaagat |
33731404 |
T |
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| Q |
101 |
gatgatataaatgcaggaccaagtagtgctac |
132 |
Q |
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| T |
33731403 |
gttgatgtagaagcaggactaagtagtactac |
33731372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 33802882 - 33802751
Alignment:
| Q |
7 |
cacttttcctcctccttttcatcttcatcaagacaatgtcaa---catgtcttcatcaca---agaaacattttgggatcatttcctgatgaatgaagat |
100 |
Q |
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|||| |||||||||||||||||| | |||||||||||||||| ||||||||| | || | ||||||||||||||||||| | ||| |||||||| |
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| T |
33802882 |
cactcttcctcctccttttcatccttatcaagacaatgtcaataacatgtcttctttacctacaacaacattttgggatcatttcatcatggatgaagat |
33802783 |
T |
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| Q |
101 |
gatgatataaatgcaggaccaagtagtgctac |
132 |
Q |
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| T |
33802782 |
gttgatgtagaagcaggactaagtagtactac |
33802751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 34283003 - 34282889
Alignment:
| Q |
160 |
catgttaggttattcctagaaggtggtgtgaatcaaattccttctccaacaattgttcctgtgtggcccagtggttatgtaccaccgcaacaaacaataa |
259 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||| | ||||| | ||||||||| || ||| |||| |||| | |||| |||||| |
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| T |
34283003 |
catgttaggttattgacagaaggtcatgtgaatcaaattccttctccatctattgtgcatgtgtggcctggtagttttgta-caccacgacaaccaataa |
34282905 |
T |
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| Q |
260 |
tgacttcagacgcttc |
275 |
Q |
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| T |
34282904 |
cgacttcagacccttc |
34282889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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