View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3060R-Insertion-37 (Length: 325)

Name: NF3060R-Insertion-37
Description: NF3060R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3060R-Insertion-37
NF3060R-Insertion-37
[»] chr5 (1 HSPs)
chr5 (8-325)||(37316799-37317136)


Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 325
Target Start/End: Complemental strand, 37317136 - 37316799
Alignment:
Q  8 atgtgaagccccaaactagaaggctaagaggattgtaattgcggatttaaa---------------tcaaatgtcctagcaatcttttaccatacggagg 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||    
T  37317136 atgtgaagccccaaactagaaggctaagaggattgtaattgcggatttaaactcacatttatcatatcaaatgtcctagcaatcttttaccatacggagg 37317037  T
Q  93 ttctgataatatgacaccgtgttaattattttttgacaaagattattgtggtgataactttatacaataaatatttaattatataaagtgtgtactttag 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||    
T  37317036 ttctgataatatgacaccgtgttaattattttttgacaaagattattgtggtgataacattataaaataaatatttaattatataaagtgtgtacattag 37316937  T
Q  193 tgtttacaaattgaagcaataacacaaggtaaaaacttcccagctgcaatagatgatttatgtacaaagtacaaaccttttgtt-----gtatgcttcta 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||    
T  37316936 tgtttacaaattgaagcaataacacaaggtaaaaacttcccagctgcaatagatgatttatgtacaaagtacaaaccttttgttgtattgtatgcttcta 37316837  T
Q  288 aaagttaagaaacattactcaattaggcaatgagaacc 325  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37316836 aaagttaagaaacattactcaattaggcaatgagaacc 37316799  T

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