View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060R-Insertion-4 (Length: 592)
Name: NF3060R-Insertion-4
Description: NF3060R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060R-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 283 - 529
Target Start/End: Original strand, 27646684 - 27646929
Alignment:
| Q |
283 |
tatcatttcaaatgtttctttgagtggtaattacgctaatattgttgcttcttctaagcattttttatttatgatccttgaatctttctatgttaagatc |
382 |
Q |
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| T |
27646684 |
tatcatttcaaatgtatctttgagtggtaattacgctaatattgttgcttcttcta-gcatttttgatttatgatccttgaatctttctatgttaagatc |
27646782 |
T |
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| Q |
383 |
catcctcctaatgttcctaagatcaaagagatgatgtggctccctccagtttacctctggattaagtgtaacattatggcattgctgatggtagtcatgg |
482 |
Q |
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| T |
27646783 |
catcctcctaatgttcctaagatcaaagatatgatgtggctccctccggtttacctctggattaagtgtaacattatggcattgctcatggtagtcatgg |
27646882 |
T |
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| Q |
483 |
tcccgcatcttgtggtggtatatttagagattaccaagctaattttc |
529 |
Q |
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| T |
27646883 |
tcccgcatcttgtggtggtatatttagagattaccaagctaattttc |
27646929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 521 - 584
Target Start/End: Original strand, 27647119 - 27647182
Alignment:
| Q |
521 |
ctaattttcttggttgnnnnnnnaacaccttatgtattgtcatggttattgttggtggctatta |
584 |
Q |
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| T |
27647119 |
ctaattttcttggttgtttttttaacaccttatgtattgtcatggttattgttggtggctatta |
27647182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 211 - 420
Target Start/End: Original strand, 34799045 - 34799254
Alignment:
| Q |
211 |
tgctatttggcattgtagaaacatgtggaggtttcaggctaatctaattccttgcaagacttcgaccaatgttatcatttcaaatgtttctttgagtggt |
310 |
Q |
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| T |
34799045 |
tgctatttgggaccgtagaaacatgtgcaggttccaggataatcgtattccttgtaagacttccatcaatactatcatttcaagtgtttcctttagtgtt |
34799144 |
T |
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| Q |
311 |
aattacgctaatattgttgcttcttctaagcatttttta-tttatgatccttgaatctttctatgttaagatccatcctcctaatgttcctaagatcaaa |
409 |
Q |
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| T |
34799145 |
aattacactactattgttgcttccact-agcatgtctgattttatgatccttaaatctttctttgttaagattcatcctcctaatgctcctgagataaaa |
34799243 |
T |
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| Q |
410 |
gagatgatgtg |
420 |
Q |
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| T |
34799244 |
gagatgatgtg |
34799254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 528
Target Start/End: Original strand, 21186891 - 21187006
Alignment:
| Q |
414 |
tgatgtggctccctccagtttacctctggattaagtgtaacatt-atggcattgctgatggtagtcatggtcccgcatcttgtggtggtatatttagaga |
512 |
Q |
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| T |
21186891 |
tgatgtggctcccttcggttcacatctgaattaagtataacactgattgtgttgttaatggtagtcttagtccagcttcctatggtggtatttttagaga |
21186990 |
T |
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| Q |
513 |
ttaccaagctaatttt |
528 |
Q |
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| T |
21186991 |
ttaccaagctaatttt |
21187006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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