View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060R-Insertion-5 (Length: 592)
Name: NF3060R-Insertion-5
Description: NF3060R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060R-Insertion-5 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 563; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 9 - 592
Target Start/End: Complemental strand, 32815120 - 32814541
Alignment:
| Q |
9 |
caaagtggtttgatttatagtatagacagatagaagttcaaaagataattcaaatactttcaattcgttgtggtttcatattatgtgttattgagctatg |
108 |
Q |
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| T |
32815120 |
caaagtggtttgatttatagtatagacagatagaagttcaaaagataatgcaaatactttcaattcgttgtggtttcatattatgtgttattgagctatg |
32815021 |
T |
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| Q |
109 |
tactttagattgaaggtgtgttcaatgtccaatacatcggtgtttgacatgatcttaaatcatttgttaggtgtctttgatagtgtttcatagttattga |
208 |
Q |
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| T |
32815020 |
tactttagattgaaggtgtgttcaatgtccaatacatcggtgtttgacatgatcttaaatcatttgttaggtgtctttgatagtgtttcatagttattga |
32814921 |
T |
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| Q |
209 |
gctataggatgtttcaatgtatttgtgtgtcctgctttatgtagataatgctttggtttctggatgtaaaatttgtgtttgtttgttctgaagcaaaact |
308 |
Q |
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| T |
32814920 |
gctataggatgtttcaatgtatttgtgtgtcctgctttatgtagataatgctttggtttctggatgtaaaatttgtgtttgtttgtt----agcaaaact |
32814825 |
T |
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| Q |
309 |
aacaaatgggctgaataacttaggttgatcggattctttactcatcagttgtctatccacataactatggttttattccaagaaccctttgtgaagatga |
408 |
Q |
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| T |
32814824 |
aacaaatgggctgaataacttaggttgatcggattctttactcatcagttgtctatccacataactatggttttattccaagaaccctttgtgaagatga |
32814725 |
T |
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| Q |
409 |
agatcccttggatgtcctagttctgatgcaggtaataatgcttaaagaactcattttaaagctattttatggaaatagctgtttattgtgaaatttgcaa |
508 |
Q |
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| T |
32814724 |
agatcccttggatgtcctagttctgatgcaggtaataatgcttaaagaactcattttaaagctattttatggaaatagctgtttattgtgaaatttgcaa |
32814625 |
T |
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| Q |
509 |
ctgtatttaaattgaaacttgtgttttgaataggagcctgtgatacctggttgtttccttcgtgcccgtgctattggattgatg |
592 |
Q |
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| T |
32814624 |
ctgtatttaaattgaaacttgtgttttgaataggagcctgtgatacctggttgtttccttcgtgcccgtgctattggattgatg |
32814541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 330 - 444
Target Start/End: Complemental strand, 8800261 - 8800147
Alignment:
| Q |
330 |
aggttgatcggattctttactcatcagttgtctatccacataactatggttttattccaagaaccctttgtgaagatgaagatcccttggatgtcctagt |
429 |
Q |
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| T |
8800261 |
aggttgatcggattctgtattcgtcagttgtttatcctcataactatggttttatccctcgaactctatgtgaagacaatgatccactcgatgtcttggt |
8800162 |
T |
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| Q |
430 |
tctgatgcaggtaat |
444 |
Q |
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| T |
8800161 |
tctcatgcaggtaat |
8800147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 298 - 442
Target Start/End: Original strand, 7986393 - 7986537
Alignment:
| Q |
298 |
gaagcaaaactaacaaatgggctgaataacttaggttgatcggattctttactcatcagttgtctatccacataactatggttttattccaagaaccctt |
397 |
Q |
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|||||| ||||||| ||||||| |||| ||||||||||||| |||||||||||||| |||||||| ||||| ||||| |||||||| ||| ||||| || |
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| T |
7986393 |
gaagcataactaactcatgggctaaataccttaggttgatcgtattctttactcatcggttgtctacccacacaactacggttttatcccacgaaccatt |
7986492 |
T |
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| Q |
398 |
tgtgaagatgaagatcccttggatgtcctagttctgatgcaggta |
442 |
Q |
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| T |
7986493 |
tgtgaagacagtgatcctatggatgttctggttctgatgcaggta |
7986537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 443
Target Start/End: Original strand, 49126665 - 49126778
Alignment:
| Q |
330 |
aggttgatcggattctttactcatcagttgtctatccacataactatggttttattccaagaaccctttgtgaagatgaagatcccttggatgtcctagt |
429 |
Q |
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|||||||||| ||| | || || |||||||| ||||| ||||||||||||||||| || | || || |||||||| | ||||| | |||||||| || |
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| T |
49126665 |
aggttgatcgaattttgtattcttcagttgtttatcctcataactatggttttatccctcgtacactctgtgaagacaatgatccaattgatgtcctggt |
49126764 |
T |
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| Q |
430 |
tctgatgcaggtaa |
443 |
Q |
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| T |
49126765 |
tctcatgcaggtaa |
49126778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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