View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060R-Insertion-7 (Length: 643)
Name: NF3060R-Insertion-7
Description: NF3060R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060R-Insertion-7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 8 - 643
Target Start/End: Original strand, 27356245 - 27356880
Alignment:
| Q |
8 |
aaaacaagctatggcagtcatttgagaaacaatcatagtgaatggcttcaaggtttctcaggttcttatgccataactactaattttgatatgcttaatt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27356245 |
aaaacaagctatggcagtcatttgagaaacaatcatagtgaatggcttcaaggtttctcaggttcttatgccataactactaattttgatatgcttaatt |
27356344 |
T |
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| Q |
108 |
aatggctatttttaagggcttgcagctggcttgactacatgttcattatcctagagtctgattgaagacctgctttgaacttaattggtgatatgattaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27356345 |
aatggctatttttaagggcttgcagctggcttgactacatgttcattatcctagagtcttattgaagacctgctttgaacttaattggtgatatgattaa |
27356444 |
T |
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| Q |
208 |
actttgcaagaagcc-ttaatgaacatgcaaaggcttatataaagtatgcttgtataaaatatgcaaaatttgtctataaagcctagcttaattagcaat |
306 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
27356445 |
actttgcaagaagcctttaatgaacatgcaaaggcttatataaagtatgcttgtataaaatatgcaaaatttgtctgtaaagcctagcttaattggcaat |
27356544 |
T |
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| Q |
307 |
gtcgaaattgttaggttggacgcctttacctgggttcgaacatatgaccttgcggtgtgtgtgagtttcggtggtgtttaccactttgtctacagaccnn |
406 |
Q |
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| T |
27356545 |
gccgaaattgttaggttggacgcctttacctgggttcgaacatatgacattgcagtgtgtgtgagtttcagtggtgtttaccactttgtctatagaccaa |
27356644 |
T |
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| Q |
407 |
nnnnnnnnnnnnnncatatgcagaatttggagctgccctcaattatttgtttggggagggtcttggaattcagataactagaaaggctaatacttcactc |
506 |
Q |
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| T |
27356645 |
aaaaaaattaaaaa-atatgcagaatttggagctgccctcaattatttgtttggggagggtcttggaattcagataactagaaaggctaatacttcactc |
27356743 |
T |
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| Q |
507 |
cttgggaaacaagttagggatattatgcataatctccacaaaatatgtgttccattgcgtgcttctaagtacttgactgatccaatttcttggagctggc |
606 |
Q |
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| T |
27356744 |
cttgggaaacaagttagggatattatgcataatctccacaaaatatgtgttccattgcgtgcttctaagtacttgactgatccaatttcttggagctggc |
27356843 |
T |
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| Q |
607 |
ttggatataactgatgatacttctcaacaatttcact |
643 |
Q |
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| T |
27356844 |
ttggatataactgatgatacttctcaacaatttcact |
27356880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 304 - 403
Target Start/End: Original strand, 38711467 - 38711566
Alignment:
| Q |
304 |
aatgtcgaaattgttaggttggacgcctttacctgggttcgaacatatgaccttgcggtgtgtgtgagtttcggtggtgtttaccactttgtctacagac |
403 |
Q |
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| T |
38711467 |
aatgtcgaaattgttaaattgaacgtctttacttgggttcgaatctaaaaccttacagtatgtgtgagttttagtggtgtttactactttgtgtacagac |
38711566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 279 - 327
Target Start/End: Complemental strand, 2107357 - 2107309
Alignment:
| Q |
279 |
gtctataaagcctagcttaattagcaatgtcgaaattgttaggttggac |
327 |
Q |
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| T |
2107357 |
gtctgtaaggcctagcttaattggcaatgtcgatattgttaggttggac |
2107309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 361 - 403
Target Start/End: Original strand, 37190790 - 37190832
Alignment:
| Q |
361 |
gtgtgtgtgagtttcggtggtgtttaccactttgtctacagac |
403 |
Q |
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| T |
37190790 |
gtgtgtgtgagttttagtggtgtttaccactttgtctagagac |
37190832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 14345408 - 14345368
Alignment:
| Q |
364 |
tgtgtgagtttcggtggtgtttaccactttgtctacagacc |
404 |
Q |
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| T |
14345408 |
tgtgtgagtttcaatggtgtttacctctttgtctacagacc |
14345368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 54325162 - 54325106
Alignment:
| Q |
276 |
tttgtctataaagcctagcttaattagcaatgtcgaaattgttaggttggacgcctt |
332 |
Q |
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| T |
54325162 |
tttgtctataaagcctagcgcaactagcaatgccgaaattactaggttggacacctt |
54325106 |
T |
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