View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060R-Insertion-8 (Length: 660)
Name: NF3060R-Insertion-8
Description: NF3060R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060R-Insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 280 - 383
Target Start/End: Complemental strand, 22099261 - 22099157
Alignment:
| Q |
280 |
atttgaaaggaagtgtgaaattgaaaaatattgataatttttgggtttgattgttctaaggaagaagagtagaagactcacgtgcttctctc-ttttatg |
378 |
Q |
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| T |
22099261 |
atttgaaagggagtgtgaaattgaaaaatattgataattttttggttagattgttctgaggaagaagagtagaagactcgcgtgcttctctctttttatg |
22099162 |
T |
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| Q |
379 |
attta |
383 |
Q |
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||||| |
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| T |
22099161 |
attta |
22099157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 431 - 501
Target Start/End: Complemental strand, 22098977 - 22098907
Alignment:
| Q |
431 |
gaggccaaaatctctacattttaaaagttagtgggtgaaaattgtgcttaagctttttaattatctcgaca |
501 |
Q |
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| T |
22098977 |
gaggtcaaaatctctacattttaaaagttagggggtgaaaattgtgtttaagctttttaattatctcgaca |
22098907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 565 - 602
Target Start/End: Complemental strand, 22098839 - 22098802
Alignment:
| Q |
565 |
ggcaaacaacatctggaaggtggaaccacatatcaaca |
602 |
Q |
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| T |
22098839 |
ggcaaacaacatctggaaggtggaaccacatatcaaca |
22098802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 19821560 - 19821614
Alignment:
| Q |
19 |
attttcatcagcctaagagtcttgagtagttagagcgtgttgttgacgaggccca |
73 |
Q |
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| T |
19821560 |
attttcatcagcctgagagccttgaccagttagagcgtgttgttgatgaggccca |
19821614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 298 - 372
Target Start/End: Original strand, 26831178 - 26831253
Alignment:
| Q |
298 |
aattgaaaaatattgataa--tttttgggtttgattgttctaaggaagaagagtagaagactcacgtgcttctctct |
372 |
Q |
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||||||||||||||||||| ||||||||||||| |||| | |||||||||| | |||||||||||||||| |||| |
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| T |
26831178 |
aattgaaaaatattgataatttttttgggtttgaatgttttggggaagaagag-aaaagactcacgtgcttccctct |
26831253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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