View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3060R-Insertion-9 (Length: 780)

Name: NF3060R-Insertion-9
Description: NF3060R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3060R-Insertion-9
NF3060R-Insertion-9
[»] chr6 (2 HSPs)
chr6 (8-433)||(1133668-1134093)
chr6 (488-780)||(1134150-1134442)
[»] chr2 (9 HSPs)
chr2 (493-771)||(28167096-28167375)
chr2 (515-589)||(30545678-30545752)
chr2 (642-759)||(44904691-44904812)
chr2 (493-759)||(28165672-28165938)
chr2 (504-595)||(44906077-44906169)
chr2 (706-771)||(30547810-30547873)
chr2 (675-771)||(5694816-5694911)
chr2 (539-589)||(44904592-44904642)
chr2 (493-573)||(5696333-5696414)
[»] chr4 (5 HSPs)
chr4 (493-747)||(11148364-11148615)
chr4 (503-759)||(34538150-34538408)
chr4 (492-771)||(34539570-34539844)
chr4 (533-589)||(41246502-41246558)
chr4 (516-604)||(2671578-2671668)
[»] chr1 (8 HSPs)
chr1 (493-771)||(13222928-13223204)
chr1 (652-759)||(13229051-13229160)
chr1 (642-759)||(40767784-40767903)
chr1 (516-566)||(43882092-43882142)
chr1 (514-589)||(40767650-40767726)
chr1 (539-585)||(46605874-46605920)
chr1 (663-747)||(12097725-12097809)
chr1 (517-565)||(28360807-28360856)
[»] chr3 (10 HSPs)
chr3 (493-771)||(3149276-3149550)
chr3 (539-595)||(27661156-27661212)
chr3 (642-759)||(3149799-3149918)
chr3 (539-589)||(27662558-27662608)
chr3 (493-589)||(3149968-3150064)
chr3 (652-747)||(26537583-26537678)
chr3 (642-707)||(27662444-27662510)
chr3 (539-589)||(34595725-34595775)
chr3 (493-565)||(26537428-26537501)
chr3 (679-747)||(39870649-39870717)
[»] chr7 (6 HSPs)
chr7 (493-780)||(38758080-38758362)
chr7 (652-759)||(38756833-38756942)
chr7 (493-566)||(38756669-38756742)
chr7 (675-742)||(5975456-5975523)
chr7 (503-589)||(30045812-30045899)
chr7 (642-730)||(30045945-30046033)
[»] chr5 (3 HSPs)
chr5 (628-780)||(33489663-33489814)
chr5 (493-588)||(6535591-6535687)
chr5 (502-587)||(33489849-33489935)
[»] chr8 (1 HSPs)
chr8 (502-566)||(25562756-25562821)


Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 8 - 433
Target Start/End: Original strand, 1133668 - 1134093
Alignment:
Q  8 acatggggcttaatagcatgttcctttctaacttttaaatttggatcatccggatgtcaacaattcatgtgtttgattggttcatacaaaaaattgtttg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||    
T  1133668 acatggggcttaatagcatgttcctttctaacttttaaatttggatcatccggatgtcaacaattcatgtatttgattggttcatacgaaaatttgtttg 1133767  T
Q  108 acttaagttgatgtattgttaatagacgatgagattgatcactctaattaattgattcttaggctatttacgagttcttaaaaagaacattctctttatc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1133768 acttaagttgatgtattgttaatagacgatgagattgatcactctaattaattgattcttaggctatttacgggttcttaaaaagaacattctctttatc 1133867  T
Q  208 taaatttatcaaatgtgtctataacattattcacttagttttagatacatttatgaagttattgacnnnnnnntatacacttatgaaattatcaatttaa 307  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  1133868 taaatttatcaaatgtgtctataacactattcacttagttttagatacatttatgaagttattgacaaaaaaatatacacttatgaaattatcaatttaa 1133967  T
Q  308 catgttattatgtctcccannnnnnnnaatatatttttagcttaaaccgatattctatatttttagcttagacagaaattctaatagtatttatcaattt 407  Q
    |||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1133968 catgttattatgtctcccattttttttaatatatttttagcttaaaccgatattctatatttttagcttagacagaaattctaatagtatctatcaattt 1134067  T
Q  408 ataagaccaaattactccattctttc 433  Q
    ||||||||||||||||||||||||||    
T  1134068 ataagaccaaattactccattctttc 1134093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 488 - 780
Target Start/End: Original strand, 1134150 - 1134442
Alignment:
Q  488 ggcttaaaggttcatgtaagttaacacgtttttgattttagtctttgtatcttttttgttgcgaaacaacccttgtattcacttaatcttttgaaattgg 587  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1134150 ggcttaaaggttcatgtaagttaacacgttttttattttagtcttcgtatcttttatgttgcgaaacaacccttgtattcacttaatcttttgaaattgg 1134249  T
Q  588 tctttgccctccgtttctatgaaagaaagnnnnnnncatagctggctaacgacacatacat-----ggaacttgatgagatgacaactgaacttagtaga 682  Q
    ||| |||| |||||||||||||||||||        |||||||||||||||||||||||||     ||||||||||||||||||||||| ||||||||||    
T  1134250 tctctgccatccgtttctatgaaagaaa--aaaaaacatagctggctaacgacacatacataacatggaacttgatgagatgacaactggacttagtaga 1134347  T
Q  683 gggactaaatcaaaaacgcatattttacatagggacaaaattagaaaacataatcatcaattttttgaaattttaaaactcattctttctaacttctt 780  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  1134348 gggactaaatcaaaaacgcata-tttacatagggacaaaattagaaaacataatcatcaa-tttttgaaa-tttaaaactcattctttctaacttctt 1134442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 493 - 771
Target Start/End: Complemental strand, 28167375 - 28167096
Alignment:
Q  493 aaaggttcatgtaagttaacacgtttttgattttagtctttgtatctttttt-gttgcgaaacaacccttgtattcacttaatcttttgaaattggtctt 591  Q
    |||||| | ||||||||| | |||||||| |||||||| ||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||     
T  28167375 aaaggtccctgtaagttagcgcgtttttggttttagtccttgtatctttttttgttgcgaaacaacccttgtatttacttaaccttttgaaattggtctc 28167276  T
Q  592 tgccctccgtttctatgaaagaaagnnnnnnncatagctggctaac-gacacatacatggaacttgatgagatgacaactgaacttagtagagggact-a 689  Q
    |||| ||  |||   | ||| |||        ||| ||||| |||| ||| ||||  ||| || ||||||| || ||||||  ||||||||||||||| |    
T  28167275 tgccgtctattttcgtaaaaaaaa--aaaacgcattgctggataacagacgcatatgtggcacatgatgagttggcaactggtcttagtagagggactaa 28167178  T
Q  690 aatcaaaaacgcatattttacatagggacaaaatt---agaaaacataatcatcaattttttgaaattttaaaactcattctttc 771  Q
    |||||||||||||| |||||||||||||| |||||   | |||||||||||||||| |||| |||  ||||||| ||||||||||    
T  28167177 aatcaaaaacgcat-ttttacatagggacgaaattaaaaaaaaacataatcatcaaattttggaa--tttaaaattcattctttc 28167096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 515 - 589
Target Start/End: Original strand, 30545678 - 30545752
Alignment:
Q  515 gtttttgattttagtctttgtatcttttttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtc 589  Q
    ||||||| ||||||||| ||||||||||||||||| ||||||| |||||||| ||||||| ||||||||||||||    
T  30545678 gtttttggttttagtctctgtatcttttttgttgcaaaacaactcttgtatttacttaatattttgaaattggtc 30545752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 642 - 759
Target Start/End: Original strand, 44904691 - 44904812
Alignment:
Q  642 catacatggaacttgatgagatgacaactgaacttagtagagggact-aaatcaaaaacgcatattttacatagggac-aaaatt---agaaaacataat 736  Q
    ||||||||| ||||||||||||||||||||  ||||||||||||||| |||| |||||| ||| ||||||||||||||  |||||   | ||||| ||||    
T  44904691 catacatggcacttgatgagatgacaactgctcttagtagagggactaaaatgaaaaacacat-ttttacatagggactgaaattaaaaaaaaacgtaat 44904789  T
Q  737 catcaattttttgaaattttaaa 759  Q
    |||||| ||||||||||||||||    
T  44904790 catcaaatttttgaaattttaaa 44904812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 493 - 759
Target Start/End: Original strand, 28165672 - 28165938
Alignment:
Q  493 aaaggttcatgtaagttaacacgtttttgattttagtctttgtatc-ttttttgttgcg-aaacaacccttgtattcacttaatcttttgaaattggtct 590  Q
    |||||| ||||||||||| | |||||||| ||||||||  |||||| |||||||||||| ||||||||||||||||  |||||  ||||||||||||||     
T  28165672 aaaggtccatgtaagttagcgcgtttttggttttagtccctgtatctttttttgttgcgaaaacaacccttgtattttcttaactttttgaaattggtcc 28165771  T
Q  591 ttgccctccgtttctatgaaagaaagnnnnnnncatagctggctaac-gacacatacatggaacttgatgagatgacaactgaacttagtagagggacta 689  Q
    | | | || |||||  | ||| |||        ||| |||||||||| | | ||||| ||  |||||||||||||  |||||  ||||||||||||||||    
T  28165772 tcgtcgtcagtttccgtaaaaaaaa-----aagcattgctggctaacggtcgcatacgtgacacttgatgagatggaaactgctcttagtagagggacta 28165866  T
Q  690 aatc-aaaaacgcatattttacatagggac--aaaattagaaaacataatcatcaattttttgaaattttaaa 759  Q
    || | |||| ||||| ||||||||| ||||  ||| | | ||||| |||||||||| ||||||||||||||||    
T  28165867 aaacgaaaagcgcat-ttttacataaggactgaaattaaaaaaacgtaatcatcaaatttttgaaattttaaa 28165938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 504 - 595
Target Start/End: Complemental strand, 44906169 - 44906077
Alignment:
Q  504 taagttaacacgtttttgattttagtctttgtatcttttttg-ttgcgaaacaacccttgtattcacttaatcttttgaaattggtctttgcc 595  Q
    ||||||| | |||||||| ||||| || |||||||||||||  ||||||||||| | ||||||| |||||| |||||||||||||||| ||||    
T  44906169 taagttagcgcgtttttggttttaatccttgtatctttttttattgcgaaacaatctttgtatttacttaaccttttgaaattggtctctgcc 44906077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 706 - 771
Target Start/End: Complemental strand, 30547873 - 30547810
Alignment:
Q  706 tttacatagggacaaaattagaaaacataatcatcaattttttgaaattttaaaactcattctttc 771  Q
    |||||||| |||| |||||| |||||||||||||||| ||||  ||| ||||||||||||||||||    
T  30547873 tttacataaggacgaaattaaaaaacataatcatcaaatttt--aaaatttaaaactcattctttc 30547810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 675 - 771
Target Start/End: Original strand, 5694816 - 5694911
Alignment:
Q  675 ttagtagagggactaaatc-aaaaacgcatattttacatagggacaaaattagaaaa-cataatcatcaattttttgaaattttaaaactcattctttc 771  Q
    |||||| |||||||||| | ||||||||| |||| |||||||||| || ||| |||| |||||||||||||||||  ||||||||||| ||| ||||||    
T  5694816 ttagtatagggactaaaaccaaaaacgca-atttaacatagggactaatttaaaaaaacataatcatcaattttt--aaattttaaaaatcagtctttc 5694911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 539 - 589
Target Start/End: Original strand, 44904592 - 44904642
Alignment:
Q  539 ttttttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtc 589  Q
    |||||||| |||||||||||||||||||  |||||  ||||||||||||||    
T  44904592 ttttttgtcgcgaaacaacccttgtattttcttaactttttgaaattggtc 44904642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 493 - 573
Target Start/End: Complemental strand, 5696414 - 5696333
Alignment:
Q  493 aaaggttcatgtaagttaacacgtttttgattttagtctttgtatctt-ttttgttgcgaaacaacccttgtattcacttaa 573  Q
    |||||| ||||||||||  | | |||||  |||||||||||||||||| |||||||| |||||||||  |||||| ||||||    
T  5696414 aaaggtccatgtaagtttgcgcatttttagttttagtctttgtatctttttttgttgtgaaacaacctctgtatttacttaa 5696333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 493 - 747
Target Start/End: Original strand, 11148364 - 11148615
Alignment:
Q  493 aaaggttcatgtaagttaacacgtttttgattttagtctttgtatctttt-ttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtctt 591  Q
    |||||| | ||||||||| | |||||||| ||||||||  | |||||||| |||||||||||||||||||||||| |||||| |||||||||||||||      
T  11148364 aaaggtccctgtaagttagcgcgtttttggttttagtcgctatatctttttttgttgcgaaacaacccttgtatttacttaaccttttgaaattggtccc 11148463  T
Q  592 tgccctccgtttctatgaaagaaagnnnnnnncatagctggctaac-gacacatacatggaacttgatgagatgacaactgaacttagtagagggact-a 689  Q
    |||| ||  ||||  | ||| |||        ||| |||||||||| |||||| || ||| || ||||||| || ||||||| ||||||||||||||| |    
T  11148464 tgccgtctatttccgtcaaaaaaa------cgcattgctggctaacagacacaaacgtggcacatgatgagttggcaactgatcttagtagagggactaa 11148557  T
Q  690 aatcaaaaacgcatattttacatagggacaaaatt-agaaaacataatcatcaattttt 747  Q
    || ||||||| ||| |||||||||||||| ||||| | |||||||||||||||| ||||    
T  11148558 aaccaaaaacacat-ttttacatagggacgaaattaaaaaaacataatcatcaaatttt 11148615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 503 - 759
Target Start/End: Original strand, 34538150 - 34538408
Alignment:
Q  503 gtaagttaacacgtttttgattttagtctttgtatctttttt-gttgcgaaacaacccttgtattcacttaatcttttgaaattggtctttgccctccgt 601  Q
    |||||||| |||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||  |||||  |||||||| ||||| | ||| || ||    
T  34538150 gtaagttagcacgtttttggttttagtccttgtatctttttttgttgcgaaacaacccttgtattttcttaactttttgaaactggtcctcgccgtcagt 34538249  T
Q  602 ttctatgaaagaaagnnnnnnncatagctggctaacga-cacatacatggaacttgatgagatgacaactgaacttagtagagggactaaatc-aaaaac 699  Q
    |||  | ||| |||        ||| | || ||||||  | ||||| ||| ||||||||||||| ||||||  |||||||||||||||||| | ||||||    
T  34538250 ttccgtaaaaaaaa--aaaaagcattgttgactaacggtcgcatacgtggcacttgatgagatggcaactgctcttagtagagggactaaaacgaaaaac 34538347  T
Q  700 gcatattttacatagggac--aaaattagaaaacataatcatcaattttttgaaattttaaa 759  Q
    |||| ||||||||||||||  ||| | | ||||| |||||||||| ||||||||||||||||    
T  34538348 gcat-ttttacatagggactgaaattaaaaaaacgtaatcatcaaatttttgaaattttaaa 34538408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 492 - 771
Target Start/End: Complemental strand, 34539844 - 34539570
Alignment:
Q  492 taaaggttcatgtaagttaacacgtttttgattttagtctttgtatctttttt-gttgcgaaacaacccttgtattcacttaatcttttgaaattggtct 590  Q
    ||||||| ||||||||||| | |||||||| ||||| ||| |||||||||||| ||||||||||||||||| |||| |||||| |||||||||||||||     
T  34539844 taaaggtccatgtaagttagcgcgtttttggttttaatctctgtatctttttttgttgcgaaacaacccttatatttacttaaccttttgaaattggtcc 34539745  T
Q  591 ttgccctccgtttctatgaaagaaagnnnnnnncatagctggctaac-gacacatacatggaacttgatgagatgacaactgaacttagtagagggacta 689  Q
     | || ||  ||||| | ||| |||        ||| | || ||||| ||| ||||| ||  || ||||||| || ||||||  ||||||||||||||||    
T  34539744 ctaccgtctatttctgtcaaaaaaa------cgcattgttgactaacagacgcatacgtgacacatgatgagttggcaactggtcttagtagagggacta 34539651  T
Q  690 aatcaaaaacgcatattttacatagggacaaaatt--agaaaacataatcatcaattttttgaaattttaaaactcattctttc 771  Q
    || |||||| |||| |||||||||||||| |||||  | |||||||||||||||| |||| |||  ||||||| ||||||||||    
T  34539650 aaacaaaaaagcat-ttttacatagggacgaaattaaaaaaaacataatcatcaaattttggaa--tttaaaattcattctttc 34539570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 533 - 589
Target Start/End: Complemental strand, 41246558 - 41246502
Alignment:
Q  533 tgtatcttttttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtc 589  Q
    ||||||||||||||| |||||||||| ||||||| || |||||||||||||||||||    
T  41246558 tgtatcttttttgttacgaaacaacctttgtatttacataatcttttgaaattggtc 41246502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 516 - 604
Target Start/End: Original strand, 2671578 - 2671668
Alignment:
Q  516 tttttgattttagtctttgtatctttt--ttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtctttgccctccgtttc 604  Q
    |||||| ||||||||  ||||||||||  ||||||||||||||||| |||||| ||||||  |||||| ||| |||  |||| ||||||||    
T  2671578 tttttggttttagtccctgtatcttttttttgttgcgaaacaacccctgtatttacttaacattttgacattcgtccctgccgtccgtttc 2671668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 493 - 771
Target Start/End: Original strand, 13222928 - 13223204
Alignment:
Q  493 aaaggttcatgtaagttaacacgtttttgattttagtctttgtatcttttttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtcttt 592  Q
    |||||| | ||||||||| |||||||||| ||||||||  |||||||||||||||||||||||||||||||||| | |||| |||||||||||||||  |    
T  13222928 aaaggtccctgtaagttagcacgtttttggttttagtccgtgtatcttttttgttgcgaaacaacccttgtatttatttaaccttttgaaattggtccct 13223027  T
Q  593 gccctccgtttctatgaaagaaagnnnnnnncatagctggctaac-gacacatacatggaacttgatgagatgacaactgaacttagtagagggact-aa 690  Q
    ||| ||  ||||  | ||| |||        ||| | |||||||| ||| ||||| ||| |  ||||||| || |||||    |||||||||||||| ||    
T  13223028 gccgtctatttccgtaaaaaaaa--aaaacgcattgttggctaacagacgcatacgtggcatatgatgagttggcaactagtgttagtagagggactaaa 13223125  T
Q  691 atcaaaaacgcatattttacatagggacaaaatt-agaaaacataatcatcaattttttgaaattttaaaactcattctttc 771  Q
    | ||||||||||| |||||||||||||| ||||| | |||||||||||||||| |||| |||  ||||||| ||||||||||    
T  13223126 accaaaaacgcat-ttttacatagggacgaaattaaaaaaacataatcatcaaattttggaa--tttaaaattcattctttc 13223204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 652 - 759
Target Start/End: Complemental strand, 13229160 - 13229051
Alignment:
Q  652 acttgatgagatgacaactgaacttagtagagggactaaatc-aaaaacgcatattttacatagggac-aaaatt-agaaaacataatcatcaatttttt 748  Q
    ||||||||||||||||||||  |||||||||||||||||| | |||||| ||| |||||||||||||| |||||| | ||||| ||||||||||||||||    
T  13229160 acttgatgagatgacaactgctcttagtagagggactaaaacgaaaaacacat-ttttacatagggactaaaattaaaaaaacgtaatcatcaatttttt 13229062  T
Q  749 gaaattttaaa 759  Q
    |||||||||||    
T  13229061 gaaattttaaa 13229051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 642 - 759
Target Start/End: Original strand, 40767784 - 40767903
Alignment:
Q  642 catacatggaacttgatgagatgacaactgaacttagtagagggactaaatc-aaaaacgcatattttacatagggac--aaaattagaaaacataatca 738  Q
    ||||| ||| ||||||||||||| ||||||  |||||||||||||||||| | |||||||||| ||||||||| ||||  ||| | | ||||| ||||||    
T  40767784 catacgtggcacttgatgagatggcaactgctcttagtagagggactaaaacgaaaaacgcat-ttttacataaggactgaaactaaaaaaacgtaatca 40767882  T
Q  739 tcaattttttgaaattttaaa 759  Q
    |||| ||||||||| ||||||    
T  40767883 tcaaatttttgaaaatttaaa 40767903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 516 - 566
Target Start/End: Original strand, 43882092 - 43882142
Alignment:
Q  516 tttttgattttagtctttgtatcttttttgttgcgaaacaacccttgtatt 566  Q
    |||||| ||||||||  ||||||||||||||||||||||||||| ||||||    
T  43882092 tttttggttttagtccctgtatcttttttgttgcgaaacaacccctgtatt 43882142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 514 - 589
Target Start/End: Original strand, 40767650 - 40767726
Alignment:
Q  514 cgtttttgattttagtctttgtatctttt-ttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtc 589  Q
    |||||||| ||||||||  |||||||||| |||||||||||||| | |||||||  |||||  ||||||||||||||    
T  40767650 cgtttttggttttagtccctgtatctttttttgttgcgaaacaatctttgtattttcttaactttttgaaattggtc 40767726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 539 - 585
Target Start/End: Complemental strand, 46605920 - 46605874
Alignment:
Q  539 ttttttgttgcgaaacaacccttgtattcacttaatcttttgaaatt 585  Q
    ||||||||||||||||||||||||||||  |||||  ||||||||||    
T  46605920 ttttttgttgcgaaacaacccttgtattttcttaactttttgaaatt 46605874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 747
Target Start/End: Complemental strand, 12097809 - 12097725
Alignment:
Q  663 tgacaactgaacttagtagagggact-aaatcaaaaacgcatattttacatagggacaaaattagaaaacataatcatcaattttt 747  Q
    |||||||||  ||||||||||||||| ||| ||||||||||| |||||  ||||||  |||||| ||||| |||| ||||||||||    
T  12097809 tgacaactggtcttagtagagggactaaaaccaaaaacgcat-ttttaggtagggatgaaattaaaaaacttaattatcaattttt 12097725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 517 - 565
Target Start/End: Original strand, 28360807 - 28360856
Alignment:
Q  517 ttttgattttagtctttgtatctttt-ttgttgcgaaacaacccttgtat 565  Q
    ||||| |||||||| ||||||||||| ||||||||||||||| |||||||    
T  28360807 ttttggttttagtccttgtatctttttttgttgcgaaacaactcttgtat 28360856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 493 - 771
Target Start/End: Original strand, 3149276 - 3149550
Alignment:
Q  493 aaaggttcatgtaagttaacacgtttttgattttagtctttgtatctttt-ttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtctt 591  Q
    |||||| | ||||||||| |  ||||| | ||||||||  |||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||     
T  3149276 aaaggtccctgtaagttagccagttttgggttttagtccatgtatctttttttgttgcgaaacaacccttgtatttacttaaccttttgaaattggtctc 3149375  T
Q  592 tgccctccgtttctatgaaagaaagnnnnnnncatagctggctaac-gacacatacatggaacttgatgagatgacaactgaacttagtagagggact-a 689  Q
    |||| ||  ||||  | ||| |||        ||| |||||||||| ||  ||||||||| || ||||||| || || |||  ||||||||||||||| |    
T  3149376 tgccgtctatttccgtcaaaaaaa------cgcattgctggctaacagatgcatacatggcacatgatgagttggcagctggtcttagtagagggactaa 3149469  T
Q  690 aatcaaaaacgcatattttacatagggacaaaatt--agaaaacataatcatcaattttttgaaattttaaaactcattctttc 771  Q
    || |||| |||||| |||||||||||||| |||||  | |||||||||||||||| |||| |||  ||||||| ||||||||||    
T  3149470 aaccaaagacgcat-ttttacatagggacgaaattaaaaaaaacataatcatcaaattttggaa--tttaaaattcattctttc 3149550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 539 - 595
Target Start/End: Original strand, 27661156 - 27661212
Alignment:
Q  539 ttttttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtctttgcc 595  Q
    |||||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||    
T  27661156 ttttttgttgcgaaacaacctttgtatttacttaattttttgaaattggtctctgcc 27661212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 642 - 759
Target Start/End: Complemental strand, 3149918 - 3149799
Alignment:
Q  642 catacatggaacttgatgagatgacaactgaacttagtagagggactaaatc-aaaaacgcatattttacatagggac--aaaattagaaaacataatca 738  Q
    ||||| ||| |||||||||||||||| |||  ||| |||||||||| ||| | |||||||||| ||||||||||||||  ||| | | ||||| ||||||    
T  3149918 catacgtggcacttgatgagatgacagctgctcttggtagagggacaaaaacgaaaaacgcat-ttttacatagggactgaaattaaaaaaacgtaatca 3149820  T
Q  739 tcaattttttgaaattttaaa 759  Q
    |||| ||||| ||||||||||    
T  3149819 tcaaatttttaaaattttaaa 3149799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 539 - 589
Target Start/End: Complemental strand, 27662608 - 27662558
Alignment:
Q  539 ttttttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtc 589  Q
    ||||||||||| |||||||||||||||| |||||| ||||||||| |||||    
T  27662608 ttttttgttgcaaaacaacccttgtatttacttaaccttttgaaagtggtc 27662558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 493 - 589
Target Start/End: Complemental strand, 3150064 - 3149968
Alignment:
Q  493 aaaggttcatgtaagttaacacgtttttgattttagtctttgta-tcttttttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtc 589  Q
    |||||| | ||||||||||| |||||||| ||||||||  |||| | |||||||||||| || ||||||||||||  |||||  ||||||||||||||    
T  3150064 aaaggtccctgtaagttaacgcgtttttggttttagtccctgtatttttttttgttgcg-aataacccttgtattttcttaactttttgaaattggtc 3149968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 652 - 747
Target Start/End: Original strand, 26537583 - 26537678
Alignment:
Q  652 acttgatgagatgacaactgaacttagtagagggact-aaatcaaaaacgcatattttacatagggacaaaattagaaaacataatcatcaattttt 747  Q
    ||||||||||||||||| ||   |||||||||||||| ||||||||||| |||| |||| ||| |||  |||||| ||||| |||||||||| ||||    
T  26537583 acttgatgagatgacaattggtgttagtagagggactaaaatcaaaaacacata-tttaaataaggatgaaattaaaaaacgtaatcatcaaatttt 26537678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 642 - 707
Target Start/End: Complemental strand, 27662510 - 27662444
Alignment:
Q  642 catacatggaacttgatgagatgacaactgaacttagtagagggactaaatc-aaaaacgcatattt 707  Q
    |||| |||| ||||||||||||| ||| ||  |||||||||||||||||| | ||||||||||||||    
T  27662510 catagatggtacttgatgagatggcaattggtcttagtagagggactaaaactaaaaacgcatattt 27662444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 539 - 589
Target Start/End: Complemental strand, 34595775 - 34595725
Alignment:
Q  539 ttttttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtc 589  Q
    |||||||||||||||||||||||||||    |||| |||||||||||||||    
T  34595775 ttttttgttgcgaaacaacccttgtatcttgttaaccttttgaaattggtc 34595725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 493 - 565
Target Start/End: Original strand, 26537428 - 26537501
Alignment:
Q  493 aaaggttcatgtaagttaacacgtttttgattttagtctttgtatcttttttg-ttgcgaaacaacccttgtat 565  Q
    |||||| ||| |||| || |||||||||| |||||||   ||||||||||||  ||||||||||||||||||||    
T  26537428 aaaggtccatataagctagcacgtttttggttttagttcctgtatctttttttattgcgaaacaacccttgtat 26537501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 747
Target Start/End: Original strand, 39870649 - 39870717
Alignment:
Q  679 tagagggactaaa-tcaaaaacgcatattttacatagggacaaaattagaaaacataatcatcaattttt 747  Q
    ||||||||||||| ||||||||| || |||||||||||||   ||||| ||||| |||||||||||||||    
T  39870649 tagagggactaaaatcaaaaacgtat-ttttacatagggatgtaattaaaaaacgtaatcatcaattttt 39870717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 9e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 493 - 780
Target Start/End: Complemental strand, 38758362 - 38758080
Alignment:
Q  493 aaaggttcatgtaagttaacacgtttttgattttagtctttgtatctttttt-gttgcgaaacaacccttgtattcacttaatcttttgaaattggtctt 591  Q
    |||||| | ||||||||| | |||||||| ||||||||  |||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||      
T  38758362 aaaggtccctgtaagttagcgcgtttttggttttagtccctgtatctttttttgttgcgaaacaacccttgtatttacttaaccttttgaaattggtccc 38758263  T
Q  592 tgccctccgtttctatgaaagaaagnnnnnnncatagctggctaac-gacacatacatggaacttgatgagatgacaactgaacttagtagagggact-a 689  Q
    | || ||  ||||  | ||| |||        ||| | |||||||| ||| ||||| ||| || ||||||  || ||||||  ||||||||||||||| |    
T  38758262 taccgtctatttccgtcaaaaaaa------tgcattgttggctaacagacgcatacgtggcacatgatgaattggcaactggtcttagtagagggactaa 38758169  T
Q  690 aatcaaaaacgcatattttacatagggacaaaatt-agaaaacataatcatcaattttttgaaattttaaaactcattctttctaacttctt 780  Q
    || ||||||| ||| |||||||||||||| ||||| | |||||||||||||||| |||| |||  ||||||| |||||||||| | ||||||    
T  38758168 aaccaaaaacacat-ttttacatagggacgaaattaaaaaaacataatcatcaaattttggaa--tttaaaattcattctttccaccttctt 38758080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 652 - 759
Target Start/End: Original strand, 38756833 - 38756942
Alignment:
Q  652 acttgatgagatgacaactgaacttagtagagggactaaatc-aaaaacgcatattttacatagggac-aaaattagaaaa-cataatcatcaatttttt 748  Q
    ||||||||||||  ||||||  |||||||||||||||||| | |||||| ||| |||||||||||||| ||||||| |||| | |||||||||| |||||    
T  38756833 acttgatgagattgcaactgctcttagtagagggactaaaacgaaaaacacat-ttttacatagggactaaaattaaaaaaacgtaatcatcaaattttt 38756931  T
Q  749 gaaattttaaa 759  Q
    |||||||||||    
T  38756932 gaaattttaaa 38756942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 493 - 566
Target Start/End: Original strand, 38756669 - 38756742
Alignment:
Q  493 aaaggttcatgtaagttaacacgtttttgattttagtctttgtatcttttttgttgcgaaacaacccttgtatt 566  Q
    |||||| | ||||||||| | |||||||| ||||||||  ||||||||||||||||||||| ||||||||||||    
T  38756669 aaaggtccctgtaagttagcgcgtttttggttttagtccctgtatcttttttgttgcgaaataacccttgtatt 38756742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 675 - 742
Target Start/End: Complemental strand, 5975523 - 5975456
Alignment:
Q  675 ttagtagagggactaaatcaaaaac-gcatattttacatagggacaaaattagaaaacataatcatcaa 742  Q
    ||||||||||||||||| ||||||  ||| |||| |||||||||| |||||| ||||||||||||||||    
T  5975523 ttagtagagggactaaaacaaaaaatgcaaattt-acatagggacgaaattaaaaaacataatcatcaa 5975456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 503 - 589
Target Start/End: Original strand, 30045812 - 30045899
Alignment:
Q  503 gtaagttaacacgtttttgattttagtctttgtatctttt-ttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtc 589  Q
    |||||||| | |||||||  ||| ||||  |||||||||| ||||||||||| ||| |||||||| | |||| |||||||||||||||    
T  30045812 gtaagttagcgcgttttttgtttaagtccatgtatctttttttgttgcgaaataactcttgtatttatttaaccttttgaaattggtc 30045899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 730
Target Start/End: Original strand, 30045945 - 30046033
Alignment:
Q  642 catacatggaacttgatgagatgacaactgaacttagtagagggact-aaatcaaaaacgcatattttacatagggacaaaattagaaaa 730  Q
    ||||| ||| || ||||||| || ||||| | ||||||||||||||| ||| |||||||| || |||||||||||||| |||||| ||||    
T  30045945 catacgtggcacatgatgagttgccaactaatcttagtagagggactaaaaccaaaaacgtat-ttttacatagggacgaaattaaaaaa 30046033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 8e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 628 - 780
Target Start/End: Complemental strand, 33489814 - 33489663
Alignment:
Q  628 gctggctaacg-acacatacatggaacttgatgagatgacaactgaacttagtagagggactaa-atcaaaaacgcatattttacatagggacaaaatta 725  Q
    ||||||||||| || ||||  ||| |||||||||| || ||||||  ||||||||||||||||| | ||||||||||| ||||||||||||||  |||||    
T  33489814 gctggctaacggacgcatatgtggcacttgatgagttggcaactggtcttagtagagggactaataccaaaaacgcat-ttttacatagggacggaatta 33489716  T
Q  726 gaaaacataatcatcaattttttgaaattttaaaactcattctttctaacttctt 780  Q
     ||||||||||||||||  |||||||| ||||||| |||||||||| | ||||||    
T  33489715 aaaaacataatcatcaa-attttgaaa-tttaaaattcattctttccaccttctt 33489663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 493 - 588
Target Start/End: Complemental strand, 6535687 - 6535591
Alignment:
Q  493 aaaggttcatgtaagttaacacgtttttgattttagtctttgtatctttttt--gttgcgaaacaacccttgtattcacttaatcttttgaaattggt 588  Q
    |||||| ||||||||||| |  |||||| |||||||||  ||||||||||||  |||||||||||||||||||||| |||||| ||||||||||||||    
T  6535687 aaaggtacatgtaagttagcg-gttttttattttagtccatgtatcttttttttgttgcgaaacaacccttgtatttacttaaccttttgaaattggt 6535591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 587
Target Start/End: Complemental strand, 33489935 - 33489849
Alignment:
Q  502 tgtaagttaacacgtttttgattttagtctttgtatctttttt-gttgcgaaacaacccttgtattcacttaatcttttgaaattgg 587  Q
    ||||||||| | |||||||  ||||||||  |||||||||||| ||||||||||||||| |||||| ||||||  |||| |||||||    
T  33489935 tgtaagttagcgcgtttttcgttttagtccctgtatctttttttgttgcgaaacaacccctgtatttacttaactttttaaaattgg 33489849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 566
Target Start/End: Complemental strand, 25562821 - 25562756
Alignment:
Q  502 tgtaagttaacacgtttttgattttagtctttgt-atcttttttgttgcgaaacaacccttgtatt 566  Q
    ||||||||  |||||||||||||||||||  | | |  ||||||||||||||||||||||||||||    
T  25562821 tgtaagttcgcacgtttttgattttagtccctctaagtttttttgttgcgaaacaacccttgtatt 25562756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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