View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060_low_3 (Length: 270)
Name: NF3060_low_3
Description: NF3060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 45281188 - 45280934
Alignment:
| Q |
9 |
acatcatcatgtaatcagaggagttgttcaacgctcaccaccttcatcccataacaaccactcaggccagggatattaggtcgtattaacatgtgttggg |
108 |
Q |
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| T |
45281188 |
acatcatcatgtaatcagaggagttgttcaacgctcaccaccttcatcccataacaaccactcaggccagggatattaggtcgtattaacatgtgttggg |
45281089 |
T |
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| Q |
109 |
ccggtataaattttataaatttgattttattggttggccatagttagttcgatttaatttaatttacaacacaaagctagctagctatagctagtgtggt |
208 |
Q |
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| T |
45281088 |
ccggtata-------taaatttgattttattggttggccatagttagttcgatttaatttaatttacaacacaaagctagctagctatagctagtgtggt |
45280996 |
T |
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| Q |
209 |
cttgttgtttgagtgtcatgcgtcataacatagtgaaccacagatcagatctcgcattacgt |
270 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
45280995 |
cttgttgtttgagtgtcatgtgtcataacatagtgaatcacagatcagatctcgcattacgt |
45280934 |
T |
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