View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3060_low_4 (Length: 249)
Name: NF3060_low_4
Description: NF3060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3060_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 4842871 - 4842626
Alignment:
| Q |
1 |
ctttaagatttttatgataatgtcaattttttgaaagatgacaggacatagttaattatgacaggactatgcaatttaaaggatttggtagaactggata |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
4842871 |
ctttaagatttttatgataatgttaattttttgaaagatgaccggacatagttaattatgacaggactatgcaatttgaaggatttggaagaactggata |
4842772 |
T |
|
| Q |
101 |
tcagctataacatgtttggtgctaaacttcctgagtgtttaagtaacttaacaaacctcaaaattcttgaccttagccataatctgttcggtggaaattt |
200 |
Q |
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||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4842771 |
tcagcaaaaacatgtttggggctaaacttcctgagtgtttaagtaacttaacaaacctcagaattcttgaccttagccataatctgttcggtggaaattt |
4842672 |
T |
|
| Q |
201 |
tccatccttcactagcaatctcacatccttgacattcttctcactc |
246 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
4842671 |
tccatccttcactaccaatctcacatccttgacattcttatcactc |
4842626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 5172654 - 5172899
Alignment:
| Q |
1 |
ctttaagatttttatgataatgtcaattttttgaaagatgacaggacatagttaattatgacaggactatgcaatttaaaggatttggtagaactggata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5172654 |
ctttaagatttttatgataatgtcaatttttgtaaagataactggacatagttaattatgacaggactatgcaatttgaaggatttggtagaactggata |
5172753 |
T |
|
| Q |
101 |
tcagctataacatgtttggtgctaaacttcctgagtgtttaagtaacttaacaaacctcaaaattcttgaccttagccataatctgttcggtggaaattt |
200 |
Q |
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||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||| |
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| T |
5172754 |
tcagcaaaaacatgtttggggctaaacttcctgagtgtttaagtaacttaacaaacctcagaattcttgaccttagccataatctattcagtggaaattt |
5172853 |
T |
|
| Q |
201 |
tccatccttcactagcaatctcacatccttgacattcttctcactc |
246 |
Q |
| |
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||||||||||| ||| ||||||||||||||||||||||| |||||| |
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| T |
5172854 |
tccatccttcattagtaatctcacatccttgacattcttatcactc |
5172899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 5195381 - 5195606
Alignment:
| Q |
2 |
tttaagatttttatgataatgtcaattttttgaaagatgacaggacatagttaattatgacaggactatgcaatttaaaggatttggtagaactggatat |
101 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5195381 |
tttaagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaattatgacaggactatgcaattttaaggatttggtagaactggatat |
5195480 |
T |
|
| Q |
102 |
cagctataacatgtttggtgctaaacttcctgagtgtttaagtaacttaacaaacctcaaaattcttgaccttagccataatctgttcggtggaaatttt |
201 |
Q |
| |
|
|||| | ||||||||| ||||||||||||| || |||||||| |||||||||||||||| | ||||||| ||||| ||||||||||| ||||||||||| |
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| T |
5195481 |
cagcaaaaacatgtttagtgctaaacttccagattgtttaagcaacttaacaaacctcagagttcttgaacttagtaataatctgttcagtggaaatttt |
5195580 |
T |
|
| Q |
202 |
ccatccttcactagcaatctcacatc |
227 |
Q |
| |
|
||||| |||| ||||||||||||||| |
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|
| T |
5195581 |
ccatctttcattagcaatctcacatc |
5195606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 5159734 - 5159964
Alignment:
| Q |
1 |
ctttaagatttttatgataatgtcaattttttgaaagatgacaggacatagttaa----ttatgacaggactatgcaatttaaaggatttggtagaactg |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
5159734 |
ctttaagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaattaattatgacaggactatgcaatttgaaggatttggtagaactg |
5159833 |
T |
|
| Q |
97 |
gatatcagctataacatgtttggtgctaaacttcctgagtgtttaagtaacttaacaaacctcaaaattcttgaccttagccataatctgttcggtggaa |
196 |
Q |
| |
|
||||||||| | ||||||||| |||||||| |||||||||||||||| |||||||||||||||| | ||||||| ||||| ||||||||||| |||||| |
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| T |
5159834 |
gatatcagccagaacatgtttagtgctaaatttcctgagtgtttaagcaacttaacaaacctcagagttcttgaacttagtaataatctgttcagtggaa |
5159933 |
T |
|
| Q |
197 |
attttccatccttcactagcaatctcacatc |
227 |
Q |
| |
|
| |||||||| |||| ||||||||||||||| |
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|
| T |
5159934 |
agtttccatctttcattagcaatctcacatc |
5159964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 5181983 - 5182212
Alignment:
| Q |
2 |
tttaagatttttatgataatgtcaattttttgaaagatgacaggacatagttaa----ttatgacaggactatgcaatttaaaggatttggtagaactgg |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||| |
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|
| T |
5181983 |
tttaagatttttatgataatgtcaatttttgtatagatgacaggacatagttaattaattatgacaggactatgcaatttgaaggatttggtagaattgg |
5182082 |
T |
|
| Q |
98 |
atatcagctataacatgtttggtgctaaacttcctgagtgtttaagtaacttaacaaacctcaaaattcttgaccttagccataatctgttcggtggaaa |
197 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||| | | ||||||| ||||| ||||||||||| ||||||| |
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| T |
5182083 |
atatcagctataacatgtttagtgctaaacttccagagtgtttaagcaacttaacaaaccttagagttcttgaacttagtaataatctgttcagtggaaa |
5182182 |
T |
|
| Q |
198 |
ttttccatccttcactagcaatctcacatc |
227 |
Q |
| |
|
||||||||| |||| ||||||||||||||| |
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| T |
5182183 |
ttttccatctttcattagcaatctcacatc |
5182212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 57 - 227
Target Start/End: Original strand, 5213602 - 5213772
Alignment:
| Q |
57 |
tatgacaggactatgcaatttaaaggatttggtagaactggatatcagctataacatgtttggtgctaaacttcctgagtgtttaagtaacttaacaaac |
156 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| || ||||||||||||||||||||| | || ||||||| ||||||||||| |||||||||||| |
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| T |
5213602 |
tatgacaggactatgcaaattgaaggatttggtagagctagatatcagctataacatgtttagcgcgcaacttcccgagtgtttaagcaacttaacaaac |
5213701 |
T |
|
| Q |
157 |
ctcaaaattcttgaccttagccataatctgttcggtggaaattttccatccttcactagcaatctcacatc |
227 |
Q |
| |
|
|| || ||||||| |||||| ||||| ||||| ||||||||||||||||||||| ||| ||||||||||| |
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|
| T |
5213702 |
ctgaatgttcttgaacttagctataatttgttcagtggaaattttccatccttcattagtaatctcacatc |
5213772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 4857151 - 4857118
Alignment:
| Q |
194 |
gaaattttccatccttcactagcaatctcacatc |
227 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
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|
| T |
4857151 |
gaaattttccatccttcactaccaatctcacatc |
4857118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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