View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3061_high_33 (Length: 238)
Name: NF3061_high_33
Description: NF3061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3061_high_33 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 9660100 - 9659881
Alignment:
| Q |
17 |
agaaatcgaaaaggaagaataaatcgaaaaggaaacgtttatagtgtggatggctatggtttggtgtaataacttgttgcttgtattgataatcatgtat |
116 |
Q |
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| T |
9660100 |
agaaatcgaaaaggaagaataaatcgaaaaggaaacgtttatagtgtggatgactacggtttggtgtaataacttgttgcttgtattgatagccatgtat |
9660001 |
T |
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| Q |
117 |
gaaattttagtttttagtctcagaactatgtagtgggttcgagtatcccttttactcttattaataccattttgcttatttaaaatattggtaaatacta |
216 |
Q |
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| T |
9660000 |
g-aattttagtttttagtctcagaacaatgtagtgggttcgagtatcccttttactcttattaataccattttgctta-ttaaaatattggtaactacta |
9659903 |
T |
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| Q |
217 |
attatttctccatgatttaact |
238 |
Q |
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| T |
9659902 |
attatttcaccatgatttaact |
9659881 |
T |
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