View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3061_high_36 (Length: 232)
Name: NF3061_high_36
Description: NF3061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3061_high_36 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 34 - 232
Target Start/End: Original strand, 6220647 - 6220845
Alignment:
| Q |
34 |
tgcatttacgatgcaacgtatataccaattgaactaatcttacatagccatattccatttagaattttattgagtatnnnnnnntttccattgaatatat |
133 |
Q |
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| T |
6220647 |
tgcatttatgatgcaacgtctataccaattgaactaatcttacatagccatattccatttagaattttattgagtataaaaagatttccattgaatatat |
6220746 |
T |
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| Q |
134 |
cttctttcgtgcgatttttgtcaaactcatggttaagttttcaaacttgcatgttatgaaacttcagttccttaaagttgttcaacgtttgatataatt |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6220747 |
cttctttcgtgcgatttttgtcaaactcatggttaagttttcaaacttgcatgttatgaaacttcagttccttaaagttgttcaacgtttgataaaatt |
6220845 |
T |
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