View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3061_high_9 (Length: 398)
Name: NF3061_high_9
Description: NF3061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3061_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 100 - 254
Target Start/End: Complemental strand, 37207230 - 37207078
Alignment:
| Q |
100 |
tgagttcaggtatattccatttacatcattctccatttagtccaattctgatcttagatggaagacatgtggcnnnnnnngattcaagggttgaaattta |
199 |
Q |
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| T |
37207230 |
tgagttcaggtatattccatttacatcattctccatttagtccaattcgggtcctagatggaaggcatctggcaaaaagagattcaagggttgagattta |
37207131 |
T |
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| Q |
200 |
tgcattatatagtgagatcaatttaaacttcatcatctcttatcattcatatttc |
254 |
Q |
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| T |
37207130 |
tgcat--tatagtgagatcaatttaaacttcatcatctcttatcaatcatatttc |
37207078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 268 - 349
Target Start/End: Complemental strand, 37207033 - 37206953
Alignment:
| Q |
268 |
tatttctagtagtaaaatttagagtgaaatcaattgaaaaaccaacaacatgaatttataatgaaatcaatttaaacttcat |
349 |
Q |
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| T |
37207033 |
tatttctagtagtaaa-tttagagtgaaatcaattgaaaaaccaacaaaatgaatttagaatgaaatcaatttaaacttcat |
37206953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 37207597 - 37207551
Alignment:
| Q |
11 |
agtgtatgtcattgtggtgtgaaagtattttgatttgattttctaagt |
58 |
Q |
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| T |
37207597 |
agtgtatgtcattgtgatgtgaa-gtattttgatttgattttctaagt |
37207551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 348 - 386
Target Start/End: Complemental strand, 37206985 - 37206947
Alignment:
| Q |
348 |
atgaatttagaatgaaatcaatttatacttcatcatctc |
386 |
Q |
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| T |
37206985 |
atgaatttagaatgaaatcaatttaaacttcatcatctc |
37206947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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