View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3061_low_1 (Length: 978)

Name: NF3061_low_1
Description: NF3061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3061_low_1
NF3061_low_1
[»] chr3 (18 HSPs)
chr3 (364-737)||(6798904-6799292)
chr3 (767-962)||(6799338-6799530)
chr3 (609-733)||(6410578-6410702)
chr3 (747-889)||(6531306-6531448)
chr3 (668-735)||(6525437-6525504)
chr3 (37-100)||(6798144-6798207)
chr3 (775-853)||(6941082-6941160)
chr3 (737-840)||(6410733-6410836)
chr3 (911-962)||(6792271-6792322)
chr3 (803-853)||(6797492-6797542)
chr3 (775-853)||(6944302-6944380)
chr3 (656-728)||(6935161-6935233)
chr3 (350-455)||(8573181-8573283)
chr3 (363-452)||(6859737-6859825)
chr3 (747-823)||(50302203-50302279)
chr3 (623-702)||(6944437-6944512)
chr3 (489-564)||(6842290-6842365)
chr3 (670-723)||(50302123-50302176)
[»] chr7 (1 HSPs)
chr7 (488-571)||(39382416-39382499)


Alignment Details
Target: chr3 (Bit Score: 124; Significance: 3e-63; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 364 - 737
Target Start/End: Original strand, 6798904 - 6799292
Alignment:
Q  364 ttgatttgtgatcaggtatgaacacttagaaaaagggacacagtgcatataagtatatctgaacaaggatgtcttctaacgacaatgatgttgtttagga 463  Q
    ||||||||||||  |||||||||||||| ||||||||||||| |||||| |||||| |||||||||||||||||||| | |||||||||||| |||||||    
T  6798904 ttgatttgtgattcggtatgaacactta-aaaaagggacacaatgcatagaagtatttctgaacaaggatgtcttctgaagacaatgatgttttttagga 6799002  T
Q  464 cttgagtacacaaattccttcccaaattgtgtta--agagtgctgaagaccaatct------aaattggagtgtggtgattcaatttcttctcggattta 555  Q
    |||||| ||||| ||||||| |||||||||||||  | | || || | |  | | |       ||||||| |||||||||||||||| ||||| ||||||    
T  6799003 cttgagaacacatattccttgccaaattgtgttaggacaatgatgcatagaagtatttgtgctaattggaatgtggtgattcaatttattctcagattta 6799102  T
Q  556 tcattttagctgcttttagccccaat-------------agaacatatttttcctctttaattagataaattactccctatgtgcatgtttggattaacc 642  Q
    |||||||| |||||||||||| ||||             || |||| |||||||    || |||| ||||||||| ||| | ||||||||||||||| ||    
T  6799103 tcattttaactgcttttagccacaatggagggagttcccagcacatctttttcc----tatttaggtaaattact-cctctatgcatgtttggattagcc 6799197  T
Q  643 gagcaattgtccgtgttttgattcccggtgaatgtgatagaattgttgtaattttgtcaacatttatacttttgaacttcaacaaagtcaggtgc 737  Q
    |||| |||||  ||||||||||||||||||||| |||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||    
T  6799198 gagctattgtttgtgttttgattcccggtgaatttgatagaattgtggtaattttgtcaaaatttgtacttttgaacttcaacaaagtcaggtgc 6799292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 767 - 962
Target Start/End: Original strand, 6799338 - 6799530
Alignment:
Q  767 taattttcatcttcccttatttttgtatgtgtttcgcttcccatattttgatcattggaatatctatggattgtgttctacatgtgtgtccataccttaa 866  Q
    ||||| |||| |||| ||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||| |||| |||||| | || |     
T  6799338 taattgtcatattccgttatttttgtatgtgtttctcttcccatattttgatcattaaaatatctatggattgtgttctatatgtctgtccaaatctgat 6799437  T
Q  867 ataactttagaaattataaaccannnnnnnnnatcctagagagtctttgttaaattaggtgattgacttctgaaagcatttttacgatgatgttac 962  Q
     ||||||||||||||| ||||||         |||| |||| |||||||||||||||| |||| |||||||||||||||||||||||| |||||||    
T  6799438 gtaactttagaaattagaaacca---ttttttatcccagagtgtctttgttaaattagatgatagacttctgaaagcatttttacgataatgttac 6799530  T

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Target: chr3; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 609 - 733
Target Start/End: Original strand, 6410578 - 6410702
Alignment:
Q  609 taaattactccctatgtgcatgtttggattaaccgagcaattgtccgtgttttgattcccggtgaatgtgatagaattgttgtaattttgtcaacattta 708  Q
    ||||||||||||||||||||||||||||||| || ||  |||||| ||||||||||||| ||||||| ||||||||||||  |||||||||||| |||||    
T  6410578 taaattactccctatgtgcatgtttggattacccaagttattgtctgtgttttgattccaggtgaatttgatagaattgtgataattttgtcaaaattta 6410677  T
Q  709 tacttttgaacttcaacaaagtcag 733  Q
    |||||||||| ||||||||| ||||    
T  6410678 tacttttgaatttcaacaaaatcag 6410702  T

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Target: chr3; HSP #4
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 747 - 889
Target Start/End: Original strand, 6531306 - 6531448
Alignment:
Q  747 aggattgattaattaattcataattttcatcttcccttatttttgtatgtgtttcgcttcccatattttgatcattggaatatctatggattgtgttcta 846  Q
    |||||||||||||| |||||||| | ||||||||||||||||||||||||||||  |||||||  |||| ||||||  ||||| ||||||||||||||||    
T  6531306 aggattgattaatttattcataactgtcatcttcccttatttttgtatgtgtttttcttcccaccttttaatcattacaatatatatggattgtgttcta 6531405  T
Q  847 catgtgtgtccataccttaaataactttagaaattataaacca 889  Q
      |||||||||||| || |||| ||||||||||||| ||||||    
T  6531406 tgtgtgtgtccatatctaaaattactttagaaattagaaacca 6531448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 668 - 735
Target Start/End: Original strand, 6525437 - 6525504
Alignment:
Q  668 cggtgaatgtgatagaattgttgtaattttgtcaacatttatacttttgaacttcaacaaagtcaggt 735  Q
    |||||||| ||||||||| || ||||||||||||| ||||||||||||||||||||||||| ||||||    
T  6525437 cggtgaatttgatagaatcgtggtaattttgtcaaaatttatacttttgaacttcaacaaaatcaggt 6525504  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 6798144 - 6798207
Alignment:
Q  37 catattttgatgtctggtgcaaataaatttcaattcactttcagccatttcagtgtgcaaattt 100  Q
    ||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||||    
T  6798144 catattttgatgtatggttcaaataaatttcaattcactttcagtcatttcagtgttcaaattt 6798207  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 775 - 853
Target Start/End: Complemental strand, 6941160 - 6941082
Alignment:
Q  775 atcttcccttatttttgtatgtgtttcgcttcccatattttgatcattggaatatctatggattgtgttctacatgtgt 853  Q
    ||||||||||||||||||||||||||  |||||||  |||| |||||| ||||||||||||| ||||||||| ||||||    
T  6941160 atcttcccttatttttgtatgtgtttttcttcccaccttttaatcattagaatatctatggactgtgttctatatgtgt 6941082  T

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Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 737 - 840
Target Start/End: Original strand, 6410733 - 6410836
Alignment:
Q  737 cattatatccaggattgattaattaattcataattttcatcttcccttatttttgtatgtgtttcgcttcccatattttgatcattggaatatctatgga 836  Q
    ||||| || |||||| ||||||||||||| ||| | ||||||||||||||||| |||||   ||  |||||||  ||||| |||||||||||||||||||    
T  6410733 cattacatacaggatggattaattaattcctaactgtcatcttcccttattttcgtatgatcttttcttcccaccttttgttcattggaatatctatgga 6410832  T
Q  837 ttgt 840  Q
    ||||    
T  6410833 ttgt 6410836  T

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Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 911 - 962
Target Start/End: Original strand, 6792271 - 6792322
Alignment:
Q  911 ctttgttaaattaggtgattgacttctgaaagcatttttacgatgatgttac 962  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  6792271 ctttgttaaattaggtgatagacttctgaaagcatttttatgatgatgttac 6792322  T

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Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 803 - 853
Target Start/End: Original strand, 6797492 - 6797542
Alignment:
Q  803 cttcccatattttgatcattggaatatctatggattgtgttctacatgtgt 853  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  6797492 cttcccatcttttgatcattggaatatctatggattgtgttctatatgtgt 6797542  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 775 - 853
Target Start/End: Complemental strand, 6944380 - 6944302
Alignment:
Q  775 atcttcccttatttttgtatgtgtttcgcttcccatattttgatcattggaatatctatggattgtgttctacatgtgt 853  Q
    ||||||||||||||||||||||||||  |||||||  |||| |||||| |||||||| |||| ||||||||| ||||||    
T  6944380 atcttcccttatttttgtatgtgtttttcttcccaccttttaatcattagaatatctctggactgtgttctatatgtgt 6944302  T

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Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 656 - 728
Target Start/End: Complemental strand, 6935233 - 6935161
Alignment:
Q  656 tgttttgattcccggtgaatgtgatagaattgttgtaattttgtcaacatttatacttttgaacttcaacaaa 728  Q
    ||||| |||||| ||||||| |||||||||||| | ||||||||| | ||||||| |||||||||||||||||    
T  6935233 tgtttggattccgggtgaatttgatagaattgtggcaattttgtccaaatttatatttttgaacttcaacaaa 6935161  T

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Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 350 - 455
Target Start/End: Original strand, 8573181 - 8573283
Alignment:
Q  350 gattcaacattttcttgatttgtgatcaggtatgaacacttagaaaaagggacacagtgcatataagtatatctgaacaaggatgtcttctaacgacaat 449  Q
    ||||||| | || |||||||||| |||||||||||| ||||  |||||||   ||||| |||| |||||| |||||||||||||||| ||| | ||||||    
T  8573181 gattcaataattgcttgatttgtaatcaggtatgaaaacttcaaaaaagg---acagttcatagaagtatttctgaacaaggatgtcgtctgaagacaat 8573277  T
Q  450 gatgtt 455  Q
    ||||||    
T  8573278 gatgtt 8573283  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 363 - 452
Target Start/End: Original strand, 6859737 - 6859825
Alignment:
Q  363 cttgatttgtgatcaggtatgaacacttagaaaaagggacacagtgcatataagtatatctgaacaaggatgtcttctaacgacaatgat 452  Q
    ||||||||||||||||||||||| ||||  ||||| ||||||||  |||| |||||| | |||||||||||||| ||| | |||||||||    
T  6859737 cttgatttgtgatcaggtatgaaaactt-caaaaaaggacacagatcatagaagtatttttgaacaaggatgtcgtctgaagacaatgat 6859825  T

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Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 747 - 823
Target Start/End: Original strand, 50302203 - 50302279
Alignment:
Q  747 aggattgattaattaattcataattttcatcttcccttatttttgtatgtgtttcgcttcccatattttgatcattg 823  Q
    ||||||||| || ||||||| | || |||| |||||||||||||||||||||||  |||||||  ||||||||||||    
T  50302203 aggattgatcaactaattcacagttgtcatgttcccttatttttgtatgtgtttttcttcccagcttttgatcattg 50302279  T

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Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 623 - 702
Target Start/End: Complemental strand, 6944512 - 6944437
Alignment:
Q  623 tgtgcatgtttggattaaccgagcaattgtccgtgttttgattcccggtgaatgtgatagaattgttgtaattttgtcaa 702  Q
    |||||||||||||||||||||| | |||||    |||||||||| |||| ||| ||||||||||||  ||||||||||||    
T  6944512 tgtgcatgtttggattaaccgatctattgt----gttttgattcacggttaatttgatagaattgtgataattttgtcaa 6944437  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 564
Target Start/End: Original strand, 6842290 - 6842365
Alignment:
Q  489 attgtgttaagagtgctgaagaccaatctaaattggagtgtggtgattcaatttcttctcggatttatcattttag 564  Q
    ||||||||||||||| |  ||| ||| || |||||||||||||||||||||| ||| ||| || ||||| ||||||    
T  6842290 attgtgttaagagtgttagagaacaaactcaattggagtgtggtgattcaatctctgctcagaattatctttttag 6842365  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 670 - 723
Target Start/End: Original strand, 50302123 - 50302176
Alignment:
Q  670 gtgaatgtgatagaattgttgtaattttgtcaacatttatacttttgaacttca 723  Q
    |||||| |||| ||||||| | ||||||||||| ||||||| ||||||||||||    
T  50302123 gtgaatttgattgaattgtggcaattttgtcaaaatttatatttttgaacttca 50302176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 488 - 571
Target Start/End: Original strand, 39382416 - 39382499
Alignment:
Q  488 aattgtgttaagagtgctgaagaccaatctaaattggagtgtggtgattcaatttcttctcggatttatcattttagctgcttt 571  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||| |||||||| |||||| ||||||    
T  39382416 aattgtgttaagagtgctgaagaacaagctaaattggagtgtggtgattcaatttctgctcagatttatctttttagttgcttt 39382499  T

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