View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3061_low_11 (Length: 401)
Name: NF3061_low_11
Description: NF3061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3061_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 52325598 - 52325227
Alignment:
| Q |
18 |
aagttgtcaatcttcataaactcataaaatcttgtagccaaactctctttcaaagcaggggaaacaggaatttctccaatcattgtctccaacaccgcct |
117 |
Q |
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| T |
52325598 |
aagttgtcaatcttcagaaactcataaaatcttgtagccaaactctctttcaaagcaggggaaacagggatttctccaatcatggtctccaacactgctt |
52325499 |
T |
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| Q |
118 |
ccgaaagcggcttgttgtttataacagcatactcatgttcaggtattgtctcatctttggagaatctaagctgtgtgattaatttgtagaaaaagaaaca |
217 |
Q |
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| T |
52325498 |
ccgaaagcggcttgttgtttataacagcatactcatgttcaggtattgtctcatctttggagaatctaagctgtgtgattaatttgtagaaaaagaaata |
52325399 |
T |
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| Q |
218 |
ttaaaatgtattgattaaaataaatattcaaatcaatgcagtttgtaatattaatgatactaaccccgaatgttccatttggtgattgtctgtagaaagc |
317 |
Q |
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| T |
52325398 |
tcaaaatgtgttgattaaaatggatatttagatacatgcaataggtaatattaatgacactaacccctaatgctccatttggtgattgtctgtagaaagc |
52325299 |
T |
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| Q |
318 |
agcagtccctggtggaaaaaattgatccttaaaagcttctctaaattcttgaatggatttttcttctgcatc |
389 |
Q |
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| T |
52325298 |
agcagttcctggtggaaaaaattgatccttaaaagcttctctaaattcttgaatggctttttcttctgcatc |
52325227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 52330026 - 52329657
Alignment:
| Q |
18 |
aagttgtcaatcttcataaactcataaaatcttgtagccaaactctctttcaaagcaggggaaacaggaatttctccaatcattgtctccaacaccgcct |
117 |
Q |
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| T |
52330026 |
aagttgtcaatcttcataaactcataaaatcttgtagccaaactctctttcaaagcaggggaaacaggaatttctccaatcatggtctccaacactgcct |
52329927 |
T |
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| Q |
118 |
ccgaaagcggcttgttgtttataacagcatactcatgttcaggtattgtctcatctttggagaatctaagctgtgtgattaatttgtagaaaaagaaaca |
217 |
Q |
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| T |
52329926 |
ctgaaagtggcttgttgtttataacaacatactcatgttccggtattgtttcatctttggagaatctaagc--tgtgattaatttgcagaaaatgaaata |
52329829 |
T |
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| Q |
218 |
ttaaaatgtattgattaaaataaatattcaaatcaatgcagtttgtaatattaatgatactaaccccgaatgttccatttggtgattgtctgtagaaagc |
317 |
Q |
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| T |
52329828 |
tcaaaatgtgttgattaaaatggatattcaaatcaatgcagtttgttatattaatgatactaacccctaatgctccatttggtgattgtctgaagaaaac |
52329729 |
T |
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| Q |
318 |
agcagtccctggtggaaaaaattgatccttaaaagcttctctaaattcttgaatggatttttcttctgcatc |
389 |
Q |
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| T |
52329728 |
accagcccctggtggaaaaaattgaaccttgaaggcttctctaagttcttgaatggctttttcttctgcatc |
52329657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 52322393 - 52322308
Alignment:
| Q |
21 |
ttgtcaatcttcataaactcataaaatcttgtagccaaactctctttcaaagcaggggaaacaggaatttctccaatcattgtctc |
106 |
Q |
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| T |
52322393 |
ttgttaatcttcataagatcataaaatcttgtagccaaactctctttcaaagcaggggaaacagaaatttctccaatcatagtctc |
52322308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 364
Target Start/End: Complemental strand, 52322198 - 52322108
Alignment:
| Q |
274 |
atactaaccccgaatgttccatttggtgattgtctgtagaaagcagcagtccctggtggaaaaaattgatccttaaaagcttctctaaatt |
364 |
Q |
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| T |
52322198 |
atactaacccctaatgttccagttggtgattgtttgtagaaaacactagcgccagttggaaaattttgatccttgaaggcttctctaaatt |
52322108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 140 - 313
Target Start/End: Complemental strand, 9179540 - 9179381
Alignment:
| Q |
140 |
aacagcatactcatgttcaggtattgtctcatctttggagaatctaagctgtgtgattaatttgtagaaaaagaaacattaaaatgtattgattaaaata |
239 |
Q |
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| T |
9179540 |
aacagcatactcatgttcatgtattgtctcatctttggagaatctaagctgtgtgattaatttgtagaaaaagaaatattaaaatg-------------- |
9179455 |
T |
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| Q |
240 |
aatattcaaatcaatgcagtttgtaatattaatgatactaaccccgaatgttccatttggtgattgtctgtaga |
313 |
Q |
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| T |
9179454 |
gatattcaaatcaatgcagtttgtaatattaatgatactaacccctaatgttccatttggtgattgtctgtaga |
9179381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 9179602 - 9179536
Alignment:
| Q |
18 |
aagttgtcaatcttcataaactcataaaatcttgtagccaaactctctttcaaagcaggggaaacag |
84 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9179602 |
aagttgtcaatcttcataaactcacaaaatcttgtagccaaactctctttcaaagcaggggaaacag |
9179536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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