View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3061_low_14 (Length: 389)
Name: NF3061_low_14
Description: NF3061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3061_low_14 |
 | |
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| [»] chr8 (11 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 5 - 389
Target Start/End: Original strand, 15284781 - 15285165
Alignment:
| Q |
5 |
catatggaagagacatactcacactttcaagtgagcaactactcaaatataactcggaaagtgaaggaaacatattcaatagctgaagccaatgcgtttc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15284781 |
catatggaagagacatactcacactttcaagtgagcaactactcaaatataactcggaaagtgaaggaaacatattcaatagctgaagccaatgcgtttc |
15284880 |
T |
|
| Q |
105 |
cttgtggagattaacggaattcaggttgagaaattgtaaggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagac |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15284881 |
cttgtggagattaacggaattcaggttgagaaattgtaaggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagac |
15284980 |
T |
|
| Q |
205 |
aagtcaagatgaaaaacattggaaaagtttccactcccatgagaagtgttaactgatgacatggtttgacaatccaacgacaattgtatagtgttgaagt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15284981 |
aagtcaagatgaaaaacattggaaaagtttccactcccataagaagtgttaactgatgacatggtttgacaatccaacgacaattgtatagtgttgaagt |
15285080 |
T |
|
| Q |
305 |
cattgttgctcaaatccaagtagttcaaaaattcaagctcgaatatagaatgatgaaatttacatgccagacaatgggttttgtt |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||| |
|
|
| T |
15285081 |
cattgttgctcaaatccaagtagttcaaaaattcaagctcgaatatagaaagatgaaatttacctgccagacaatgtgttttgtt |
15285165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 5 - 389
Target Start/End: Original strand, 15465150 - 15465534
Alignment:
| Q |
5 |
catatggaagagacatactcacactttcaagtgagcaactactcaaatataactcggaaagtgaaggaaacatattcaatagctgaagccaatgcgtttc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15465150 |
catatggaagagacatactcacactttcaagtgagcaactactcaaatataactcggaaagtgaaggaaacatattcaatagctgaagccaatgcgtttc |
15465249 |
T |
|
| Q |
105 |
cttgtggagattaacggaattcaggttgagaaattgtaaggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagac |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15465250 |
cttgtggagattaacggaattcaggttgagaaattgtaaggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagac |
15465349 |
T |
|
| Q |
205 |
aagtcaagatgaaaaacattggaaaagtttccactcccatgagaagtgttaactgatgacatggtttgacaatccaacgacaattgtatagtgttgaagt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15465350 |
aagtcaagatgaaaaacattggaaaagtttccactcccataagaagtgttaactgatgacatggtttgacaatccaacgacaattgtatagtgttgaagt |
15465449 |
T |
|
| Q |
305 |
cattgttgctcaaatccaagtagttcaaaaattcaagctcgaatatagaatgatgaaatttacatgccagacaatgggttttgtt |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||| |
|
|
| T |
15465450 |
cattgttgctcaaatccaagtagttcaaaaattcaagctcgaatatagaaagatgaaatttacctgccagacaatgtgttttgtt |
15465534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 5 - 389
Target Start/End: Original strand, 15303296 - 15303680
Alignment:
| Q |
5 |
catatggaagagacatactcacactttcaagtgagcaactactcaaatataactcggaaagtgaaggaaacatattcaatagctgaagccaatgcgtttc |
104 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||| ||||| |
|
|
| T |
15303296 |
catatggaagagacgggctcaaactttcaagtgagcaactactcaaatataactcagaaagtgaaggaagcatattcaatatctgaagccaatgtgtttc |
15303395 |
T |
|
| Q |
105 |
cttgtggagattaacggaattcaggttgagaaattgtaaggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagac |
204 |
Q |
| |
|
|||||||| |||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15303396 |
cttgtggatattaacataatccaggttgataaattgtaaggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagac |
15303495 |
T |
|
| Q |
205 |
aagtcaagatgaaaaacattggaaaagtttccactcccatgagaagtgttaactgatgacatggtttgacaatccaacgacaattgtatagtgttgaagt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15303496 |
aagtcaagatgaaaaacattggaaaagtttccactcccatgagaagtgttaactgatgacatggtttgacaatccaacgacaattgtatagtgttgaagt |
15303595 |
T |
|
| Q |
305 |
cattgttgctcaaatccaagtagttcaaaaattcaagctcgaatatagaatgatgaaatttacatgccagacaatgggttttgtt |
389 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||| || || ||||| |||||||| |
|
|
| T |
15303596 |
cattgttgctcaaatccaagtagtttaaaaattcaagctcgaatatagaaaggtgaaatttacctgttaggcaatgtgttttgtt |
15303680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 5 - 389
Target Start/End: Original strand, 15483665 - 15484049
Alignment:
| Q |
5 |
catatggaagagacatactcacactttcaagtgagcaactactcaaatataactcggaaagtgaaggaaacatattcaatagctgaagccaatgcgtttc |
104 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||| ||||| |
|
|
| T |
15483665 |
catatggaagagacgggctcaaactttcaagtgagcaactactcaaatataactcagaaagtgaaggaagcatattcaatatctgaagccaatgtgtttc |
15483764 |
T |
|
| Q |
105 |
cttgtggagattaacggaattcaggttgagaaattgtaaggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagac |
204 |
Q |
| |
|
|||||||| |||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15483765 |
cttgtggatattaacataatccaggttgataaattgtaaggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagac |
15483864 |
T |
|
| Q |
205 |
aagtcaagatgaaaaacattggaaaagtttccactcccatgagaagtgttaactgatgacatggtttgacaatccaacgacaattgtatagtgttgaagt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15483865 |
aagtcaagatgaaaaacattggaaaagtttccactcccatgagaagtgttaactgatgacatggtttgacaatccaacgacaattgtatagtgttgaagt |
15483964 |
T |
|
| Q |
305 |
cattgttgctcaaatccaagtagttcaaaaattcaagctcgaatatagaatgatgaaatttacatgccagacaatgggttttgtt |
389 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||| || || ||||| |||||||| |
|
|
| T |
15483965 |
cattgttgctcaaatccaagtagtttaaaaattcaagctcgaatatagaaaggtgaaatttacctgttaggcaatgtgttttgtt |
15484049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 48 - 380
Target Start/End: Original strand, 15314204 - 15314536
Alignment:
| Q |
48 |
caaatataactcggaaagtgaaggaaacatattcaatagctgaagccaatgcgtttccttgtggagattaacggaattcaggttgagaaattgtaaggat |
147 |
Q |
| |
|
||||| |||||| |||||||||||||||||| |||||| ||||||||| | |||||| | ||||||| || ||| | |||||||||||||||||||||| |
|
|
| T |
15314204 |
caaatgtaactcagaaagtgaaggaaacatagtcaatatttgaagccaacgagtttccctatggagatcaatggagtccaggttgagaaattgtaaggat |
15314303 |
T |
|
| Q |
148 |
gatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacattggaaaagtttccactcccatgag |
247 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15314304 |
gacgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacattggaaaagtttccactcccatgag |
15314403 |
T |
|
| Q |
248 |
aagtgttaactgatgacatggtttgacaatccaacgacaattgtatagtgttgaagtcattgttgctcaaatccaagtagttcaaaaattcaagctcgaa |
347 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||| ||||| | ||||| || ||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
15314404 |
aagtgttaactgatgacaatttttgacaatccattggcaagtgtatggatttgaaatcgttgttgctcaaatccaagtagttcaaaaattcaaggtcaaa |
15314503 |
T |
|
| Q |
348 |
tatagaatgatgaaatttacatgccagacaatg |
380 |
Q |
| |
|
|| |||| |||||| ||||| ||||| |||||| |
|
|
| T |
15314504 |
taaagaaagatgaattttacctgccaaacaatg |
15314536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 48 - 380
Target Start/End: Original strand, 15494573 - 15494905
Alignment:
| Q |
48 |
caaatataactcggaaagtgaaggaaacatattcaatagctgaagccaatgcgtttccttgtggagattaacggaattcaggttgagaaattgtaaggat |
147 |
Q |
| |
|
||||| |||||| |||||||||||||||||| |||||| ||||||||| | |||||| | ||||||| || ||| | |||||||||||||||||||||| |
|
|
| T |
15494573 |
caaatgtaactcagaaagtgaaggaaacatagtcaatatttgaagccaacgagtttccctatggagatcaatggagtccaggttgagaaattgtaaggat |
15494672 |
T |
|
| Q |
148 |
gatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacattggaaaagtttccactcccatgag |
247 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15494673 |
gacgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacattggaaaagtttccactcccatgag |
15494772 |
T |
|
| Q |
248 |
aagtgttaactgatgacatggtttgacaatccaacgacaattgtatagtgttgaagtcattgttgctcaaatccaagtagttcaaaaattcaagctcgaa |
347 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||| ||||| | ||||| || ||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
15494773 |
aagtgttaactgatgacaatttttgacaatccattggcaagtgtatggatttgaaatcgttgttgctcaaatccaagtagttcaaaaattcaaggtcaaa |
15494872 |
T |
|
| Q |
348 |
tatagaatgatgaaatttacatgccagacaatg |
380 |
Q |
| |
|
|| |||| |||||| ||||| ||||| |||||| |
|
|
| T |
15494873 |
taaagaaagatgaattttacctgccaaacaatg |
15494905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 24 - 258
Target Start/End: Original strand, 15447063 - 15447297
Alignment:
| Q |
24 |
cacactttcaagtgagcaactactcaaatataactcggaaagtgaaggaaacatattcaatagctgaagccaatgcgtttccttgtggagattaacggaa |
123 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||| ||||||||||||| ||||||||||| |||||||||| |||||||||||||||||| ||| || |
|
|
| T |
15447063 |
cacactttcaagtaagcaactactcaaatgtaactcagaaagtgaaggaagcatattcaatatctgaagccaaagcgtttccttgtggagatcaacataa |
15447162 |
T |
|
| Q |
124 |
ttcaggttgagaaattgtaaggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacat |
223 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
15447163 |
tccaggttgagaaattgtaaggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagacaagtcaaggtgaacaacat |
15447262 |
T |
|
| Q |
224 |
tggaaaagtttccactcccatgagaagtgttaact |
258 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
15447263 |
ttgaaaagtttccactcccataagaagtgttaact |
15447297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 297 - 389
Target Start/End: Original strand, 15447303 - 15447395
Alignment:
| Q |
297 |
gttgaagtcattgttgctcaaatccaagtagttcaaaaattcaagctcgaatatagaatgatgaaatttacatgccagacaatgggttttgtt |
389 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| || |||| |||||||||||| |||||||| |
|
|
| T |
15447303 |
gttgaagtcattgttgctcaaattcaagtagttcaaaaattcaagctcgaatatagaaagatgcaacttacctgccagacaatgtgttttgtt |
15447395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 236
Target Start/End: Original strand, 18052811 - 18053015
Alignment:
| Q |
29 |
tttcaagtgagcaactactcaaatataactcggaaagtgaaggaaacatattcaatagctgaagccaatgcgtttccttgtggagattaacggaattcag |
128 |
Q |
| |
|
|||||||| ||||||||||||||| |||||| ||||| ||||||| |||| | || | ||||||||||| |||| ||| | |||| || | ||| | |
|
|
| T |
18052811 |
tttcaagtaagcaactactcaaatgtaactcagaaagcgaaggaagcatagttaacatttgaagccaatgattttctttgcgaagatcaatgaaatcaaa |
18052910 |
T |
|
| Q |
129 |
gttgagaaattgtaaggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacattggaa |
228 |
Q |
| |
|
||||||| ||| ||| |||||| || |||||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||||| ||||| |||| |
|
|
| T |
18052911 |
gttgagatattctaatgatgat---aggcgaagaagccatttcaaatcatcaatcacaagattctcatttcctgacaaatcaagatgaacaacatcggaa |
18053007 |
T |
|
| Q |
229 |
aagtttcc |
236 |
Q |
| |
|
|||||||| |
|
|
| T |
18053008 |
aagtttcc |
18053015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 15298535 - 15298603
Alignment:
| Q |
5 |
catatggaagagacatactcacactttcaagtgagcaactactcaaatataactcggaaagtgaaggaa |
73 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
15298535 |
catatggaagtgacgagctcaaactttcaagtgagccactactcaaatataactctgaaagtgaaggaa |
15298603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 15478904 - 15478972
Alignment:
| Q |
5 |
catatggaagagacatactcacactttcaagtgagcaactactcaaatataactcggaaagtgaaggaa |
73 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
15478904 |
catatggaagtgacgagctcaaactttcaagtgagccactactcaaatataactctgaaagtgaaggaa |
15478972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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