View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3061_low_16 (Length: 356)
Name: NF3061_low_16
Description: NF3061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3061_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 128 - 343
Target Start/End: Complemental strand, 33861368 - 33861152
Alignment:
| Q |
128 |
tcttttggaaccaaacaaacaataaatagagaatataaaaccacatt-tggagtacgataaagttgttcaaatatcattactcatctnnnnnnntatgac |
226 |
Q |
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| T |
33861368 |
tcttttggaaccaaccaaacaataaatagagaatataaaaccacaatctggagtacgataaagttgttcaaatatcattactcatctaagaaaatatgac |
33861269 |
T |
|
| Q |
227 |
tccaccaccactatgtgtctatgaagtaatttccgctaaaatttgttaaactcggcataagtatagaagcttgatttctcgaattctatttgttaaaacc |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33861268 |
tccaccaccactatgtgtctatgaagtaatttccgctaaaatttgttaaactcggcataagtatagaagcttgatttctcgaattctatttgttaaaacc |
33861169 |
T |
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| Q |
327 |
tatcttcctttgggttc |
343 |
Q |
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||||||||||||||||| |
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| T |
33861168 |
tatcttcctttgggttc |
33861152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 33861442 - 33861344
Alignment:
| Q |
19 |
atgatgagtgaaagaggacagggacaacaagtatatctatccaagatatatttagacaacattctttttccttttcttttggaaccaaccaaacaataa |
117 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33861442 |
atgatgagtgaaagaggactgggacaacaagtatatctatccaagatatatttagacaacattctttttccttttcttttggaaccaaccaaacaataa |
33861344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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