View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3061_low_18 (Length: 324)
Name: NF3061_low_18
Description: NF3061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3061_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 6e-99; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 15823468 - 15823758
Alignment:
| Q |
18 |
caagctactgagtatgcattgcagaagtcattggaaaaggtcatacaatctcctactccgaaacaaccagccaaagagattcaaggactagatcaaatca |
117 |
Q |
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||||||||||||||||||||| ||||||||||||| ||| ||| ||||||||||||||| | |||| |||| ||| ||| ||||| ||| ||||||||| |
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| T |
15823468 |
caagctactgagtatgcattgaagaagtcattggacaagatcacacaatctcctactccagagcaacaagccgaagtgatacaaggcctatatcaaatca |
15823567 |
T |
|
| Q |
118 |
aacaatatttgtaccatttcggctacctccaacaatctgggcaattcaataactttctagaccaataaacaatctcagccattaagacttaccaacaaag |
217 |
Q |
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| T |
15823568 |
aacaatatttgtactatttcggctacctccaacaatatgggccattcaataatgttctagaccaacaaacaatgtcagccattaagatctaccaacaaaa |
15823667 |
T |
|
| Q |
218 |
tttcaatcttcaagttactgatggttacctaaacaccgagacttcacaacaaatcttgttaccacgatgtggtgttcctgatatgaatttc |
308 |
Q |
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| T |
15823668 |
tttcaatctccaagttactaatggctacctaaacactgagacttcacaacaaatcttgttaccacgatgtggtgttcctgatatgaatttc |
15823758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 213
Target Start/End: Original strand, 15836252 - 15836359
Alignment:
| Q |
106 |
tagatcaaatcaaacaatatttgtaccatttcggctacctccaacaatctgggcaattcaataactttctagaccaataaacaatctcagccattaagac |
205 |
Q |
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| T |
15836252 |
tagatcaaatcaaacaatatttgtccgatttcggctacctcgaacaatctgggccgttcaataacactctagaccaagaaacagtcttagcccttaagac |
15836351 |
T |
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| Q |
206 |
ttaccaac |
213 |
Q |
| |
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||||||| |
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| T |
15836352 |
ctaccaac |
15836359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 307
Target Start/End: Original strand, 15720893 - 15721121
Alignment:
| Q |
79 |
aacaaccagccaaagagattcaaggactagatcaaatcaaacaatatttgtaccatttcggctacctccaacaatctgggc---aattcaataactttct |
175 |
Q |
| |
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| T |
15720893 |
aacaaccaacaaaagagattgaaggcctatctcaaatcaaacaacatttggacactttcggctacttccaacgatctccgctggactttgatgacgttct |
15720992 |
T |
|
| Q |
176 |
agaccaataaacaatctcagccattaagacttaccaacaaagtttcaatcttcaagttactgatggttacctaaacaccgagacttcacaacaaatcttg |
275 |
Q |
| |
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|||| | ||||||| || || |||||| ||||||||||| ||||||||| || ||||||| || ||||| || ||||||||| ||||| | ||||| |
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| T |
15720993 |
agacaaggaaacaatatccgctattaaggcttaccaacaatttttcaatctccaggttactg---gtcacctagactccgagactttacaactactcttg |
15721089 |
T |
|
| Q |
276 |
ttaccacgatgtggtgttcctgatatgaattt |
307 |
Q |
| |
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|||||| ||||||||||||||||||||||||| |
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| T |
15721090 |
ttaccaagatgtggtgttcctgatatgaattt |
15721121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 184 - 303
Target Start/End: Original strand, 15813448 - 15813564
Alignment:
| Q |
184 |
aaacaatctcagccattaagacttaccaacaaagtttcaatcttcaagttactgatggttacctaaacaccgagacttcacaacaaatcttgttaccacg |
283 |
Q |
| |
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||||||| || || |||||||| ||||||||| ||||||||| |||||||||| || |||||||||||||||||| |||| |||||| |||||| || |
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| T |
15813448 |
aaacaatatccgctattaagacctaccaacaatttttcaatctccaagttactg---gtaacctaaacaccgagactttacaaaaaatctcgttaccgcg |
15813544 |
T |
|
| Q |
284 |
atgtggtgttcctgatatga |
303 |
Q |
| |
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||||||| |||||||||||| |
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| T |
15813545 |
atgtggtattcctgatatga |
15813564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 100 - 213
Target Start/End: Original strand, 15819190 - 15819303
Alignment:
| Q |
100 |
aaggactagatcaaatcaaacaatatttgtaccatttcggctacctccaacaatctgggcaattcaataactttctagaccaataaacaatctcagccat |
199 |
Q |
| |
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|||| |||||||| ||||||||||||||| | |||||||||||||| |||||||||||| ||||||||| |||||||||| ||||| ||| |||| | |
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| T |
15819190 |
aaggtctagatcagatcaaacaatatttgcaaaatttcggctacctcgaacaatctgggccgttcaataacactctagaccaagaaacagtcttagccct |
15819289 |
T |
|
| Q |
200 |
taagacttaccaac |
213 |
Q |
| |
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|||||| ||||||| |
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| T |
15819290 |
taagacctaccaac |
15819303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 184 - 301
Target Start/End: Original strand, 15717179 - 15717293
Alignment:
| Q |
184 |
aaacaatctcagccattaagacttaccaacaaagtttcaatcttcaagttactgatggttacctaaacaccgagacttcacaacaaatcttgttaccacg |
283 |
Q |
| |
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||||||| || || |||||| | ||||||||| |||||||||||||||||| | || ||||| |||||||||||| |||||||||| |||||||||| |
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| T |
15717179 |
aaacaatatccgctattaaggcctaccaacaatttttcaatcttcaagttacgg---gtcacctagacaccgagactttacaacaaatcatgttaccacg |
15717275 |
T |
|
| Q |
284 |
atgtggtgttcctgatat |
301 |
Q |
| |
|
|||||||||||| ||||| |
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| T |
15717276 |
atgtggtgttcccgatat |
15717293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 184 - 304
Target Start/End: Original strand, 15723508 - 15723625
Alignment:
| Q |
184 |
aaacaatctcagccattaagacttaccaacaaagtttcaatcttcaagttactgatggttacctaaacaccgagacttcacaacaaatcttgttaccacg |
283 |
Q |
| |
|
||||||| || || |||||||| ||||||||| ||||||||| |||||||||| || |||||||||||||||||| ||||||| ||| ||| ||| | |
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| T |
15723508 |
aaacaatatccgctattaagacctaccaacaatttttcaatctccaagttactg---gtcacctaaacaccgagactttacaacaattctcgtttccaag |
15723604 |
T |
|
| Q |
284 |
atgtggtgttcctgatatgaa |
304 |
Q |
| |
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||||||| ||||||||||||| |
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| T |
15723605 |
atgtggtattcctgatatgaa |
15723625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 302
Target Start/End: Original strand, 15729729 - 15729845
Alignment:
| Q |
184 |
aaacaatctcagccattaagacttaccaacaaagtttcaatcttcaagttactgatggttacctaaacaccgagacttcacaacaaa-tcttgttaccac |
282 |
Q |
| |
|
||||||| || || |||||||| ||||||||| ||||||||| |||||||||| || |||||||||||||||||| |||| ||| ||| |||||| | |
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| T |
15729729 |
aaacaatatccgctattaagacgtaccaacaatttttcaatctccaagttactg---gtcacctaaacaccgagactttacaaaaaaatctcgttaccgc |
15729825 |
T |
|
| Q |
283 |
gatgtggtgttcctgatatg |
302 |
Q |
| |
|
|||||||| ||||||||||| |
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| T |
15729826 |
gatgtggtattcctgatatg |
15729845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 15819363 - 15819395
Alignment:
| Q |
276 |
ttaccacgatgtggtgttcctgatatgaatttc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
15819363 |
ttaccacgatgtggtgttcctgatatgaatttc |
15819395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 184 - 303
Target Start/End: Original strand, 33100125 - 33100241
Alignment:
| Q |
184 |
aaacaatctcagccattaagacttaccaacaaagtttcaatcttcaagttactgatggttacctaaacaccgagacttcacaacaaatcttgttaccacg |
283 |
Q |
| |
|
||||||| || || |||||||| ||||||||| ||||||||| |||||||||| || |||||||||||||||||| |||| |||||| |||||| || |
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|
| T |
33100125 |
aaacaatatccgctattaagacctaccaacaatttttcaatctccaagttactg---gtaacctaaacaccgagactttacaaaaaatctcgttaccgcg |
33100221 |
T |
|
| Q |
284 |
atgtggtgttcctgatatga |
303 |
Q |
| |
|
||||||| |||||||||||| |
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|
| T |
33100222 |
atgtggtattcctgatatga |
33100241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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