View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3061_low_2 (Length: 663)

Name: NF3061_low_2
Description: NF3061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3061_low_2
NF3061_low_2
[»] chr2 (5 HSPs)
chr2 (101-400)||(7783036-7783336)
chr2 (462-650)||(7782786-7782974)
chr2 (19-104)||(7783629-7783714)
chr2 (136-201)||(37741552-37741617)
chr2 (584-646)||(32614910-32614972)
[»] chr6 (1 HSPs)
chr6 (541-640)||(8348278-8348377)
[»] chr8 (1 HSPs)
chr8 (605-649)||(2594980-2595024)
[»] chr5 (1 HSPs)
chr5 (541-636)||(40159873-40159969)
[»] chr4 (1 HSPs)
chr4 (588-649)||(46401307-46401368)
[»] scaffold0147 (1 HSPs)
scaffold0147 (613-649)||(4926-4962)
[»] chr3 (1 HSPs)
chr3 (584-640)||(24785313-24785369)
[»] chr1 (1 HSPs)
chr1 (548-640)||(24417661-24417753)


Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 101 - 400
Target Start/End: Complemental strand, 7783336 - 7783036
Alignment:
Q  101 tttattggaatggcatcgatgactttgttgaacaatgacccaagagttcactaccattatgatttaatccgattctaccattgtaactgatttgtttgtt 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7783336 tttattggaattgcatcgatgactttgttgaacaatgacccaaaagttcactaccattatgatttaatccgattctaccattgtaactgatttgtttgtt 7783237  T
Q  201 tcgtcaagcagattcaacaatttcaaagtttcagttggaatatttacatactcttagatacatggacattgatgattttaactcaaacattttttacaag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7783236 tcgtcaagcagattcaacaatttcaaagtttcagttggaatatttacatactcttggatacatggacattgatgattttaactcaaacattttttacaag 7783137  T
Q  301 accccaaaatttcacgtggtttatcaggtggaa-ttgaccaatgataaaaatgactagtaaaagatcaaattattccccatatctaggttgactatgtgg 399  Q
    | ||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  7783136 atcccaaaatttcacgtggtttatcaggtggaatttgaccaatgataaaaatgaccggtaaaagatcaaattattccccatatctaggttgactatgtgg 7783037  T
Q  400 t 400  Q
    |    
T  7783036 t 7783036  T

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Target: chr2; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 462 - 650
Target Start/End: Complemental strand, 7782974 - 7782786
Alignment:
Q  462 ggagaagtttattctctctctgtttctagatattttacaacggtttattgttttcaaatctctttcaatacatcgagtttgtttacattgactaatttaa 561  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  7782974 ggagaagtttattctctctctgtttctaaatattttacaacggtttattgctttcaaatctctttcaatacattgagtttgtttacattgacttatttaa 7782875  T
Q  562 gtttatctatcgatataaatatttgtgatactgtttaagagaatttacaaaaacaacttataacattttcataagttgtgttcagcttc 650  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7782874 gtttatctatcgatataaatatttgtgatactgtttaagagaatttataaaaacaacttataacattttcataagttgtgttcagcttc 7782786  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 7783714 - 7783629
Alignment:
Q  19 attcatgcaatgcaacctcttctaaggtgttatgtttatgataacatgttggtttatttggaagtctacgaatgatgtagtattta 104  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||    
T  7783714 attcatgcaatgcaacctcttctaaggggttatgtttatgataacatgttggtatatttggaagtctatgaatgatttagtattta 7783629  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 37741552 - 37741617
Alignment:
Q  136 tgacccaagagttcactaccattatgatttaatccgattctaccattgtaactgatttgtttgttt 201  Q
    |||| |||||||||| ||||||||| ||| | |||||||||||||||||||| || ||||||||||    
T  37741552 tgactcaagagttcattaccattataattgattccgattctaccattgtaaccgaattgtttgttt 37741617  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 646
Target Start/End: Original strand, 32614910 - 32614972
Alignment:
Q  584 ttgtgatactgtttaagagaatttacaaaaacaacttataacattttcataagttgtgttcag 646  Q
    ||||||||| || |||||||| ||| ||||||||||||| |||| |||||| ||||| |||||    
T  32614910 ttgtgatacagtgtaagagaacttataaaaacaacttatgacatgttcatatgttgttttcag 32614972  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 541 - 640
Target Start/End: Complemental strand, 8348377 - 8348278
Alignment:
Q  541 tgtttacattgactaatttaagtttatctatcgatataaatatttgtgatactgtttaagagaatttacaaaaacaacttataacattttcataagttgt 640  Q
    |||||| || |||| |||| || ||||||| ||||||||  |||| ||||||||||| |||||  |||| |||||||||||||||||   ||||||||||    
T  8348377 tgtttagatcgacttattttagcttatctaccgatataatcatttttgatactgtttgagagagcttacgaaaacaacttataacatgaccataagttgt 8348278  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 649
Target Start/End: Original strand, 2594980 - 2595024
Alignment:
Q  605 tttacaaaaacaacttataacattttcataagttgtgttcagctt 649  Q
    |||||||||||||||||| |||| |||||||||||| ||||||||    
T  2594980 tttacaaaaacaacttatgacatgttcataagttgttttcagctt 2595024  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 541 - 636
Target Start/End: Complemental strand, 40159969 - 40159873
Alignment:
Q  541 tgtttacattgactaatttaagtttatctatcgatataaatatttgtgatactgtttaagagaatttacaaaaacaacttataacat-tttcataag 636  Q
    |||||| ||||||| |||||||||||||||   | ||||| || ||||||||||||| | |||  ||| ||||||||||||| |||| |||||||||    
T  40159969 tgtttaaattgacttatttaagtttatctacttacataaacatgtgtgatactgtttgaaagagcttagaaaaacaacttatgacatgtttcataag 40159873  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 649
Target Start/End: Complemental strand, 46401368 - 46401307
Alignment:
Q  588 gatactgtttaagagaatttacaaaaacaacttataacattttcataagttgtgttcagctt 649  Q
    ||||||||||| |||||||||   | ||||||||| |||| |||||||||||| ||||||||    
T  46401368 gatactgtttaggagaatttatgtacacaacttatgacatgttcataagttgtattcagctt 46401307  T

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Target: scaffold0147 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 613 - 649
Target Start/End: Original strand, 4926 - 4962
Alignment:
Q  613 aacaacttataacattttcataagttgtgttcagctt 649  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  4926 aacaacttataacatgttcataagttgttttcagctt 4962  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 640
Target Start/End: Complemental strand, 24785369 - 24785313
Alignment:
Q  584 ttgtgatactgtttaagagaatttacaaaaacaacttataacattttcataagttgt 640  Q
    |||||| |||||||  ||||| ||||||||||| ||||  |||||||||||||||||    
T  24785369 ttgtgacactgtttcggagaacttacaaaaacatcttaggacattttcataagttgt 24785313  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 640
Target Start/End: Original strand, 24417661 - 24417753
Alignment:
Q  548 attgactaatttaagtttatctatcgatataaatatttgtgatactgtttaagagaatttacaaaaacaacttataacattttcataagttgt 640  Q
    ||||||| |||| |||||||||||  |||||| || |||||| ||| ||| | ||||| |  ||||||||||||| |||| ||||| ||||||    
T  24417661 attgacttatttgagtttatctattaatataagtacttgtgagactatttgaaagaatgtgtaaaaacaacttatgacatattcattagttgt 24417753  T

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