View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3061_low_21 (Length: 302)

Name: NF3061_low_21
Description: NF3061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3061_low_21
NF3061_low_21
[»] chr4 (3 HSPs)
chr4 (20-302)||(25584782-25585064)
chr4 (54-302)||(25589699-25589947)
chr4 (54-302)||(25599351-25599599)


Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 302
Target Start/End: Original strand, 25584782 - 25585064
Alignment:
Q  20 ttgttctctttctcttgtttttattttcttcctgtggttggtgttgcaggtattgagtgctatccaggaactagaattggaaggnnnnnnngcagcagca 119  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  25584782 ttgttctctttctctcgtttttcttttcttcctgtggttggtgttgcaggtattgagtgctatccaggaactagaattggaaggaaaaaaagcagcagca 25584881  T
Q  120 gttttcatcacttcacctacttatcatggtatttgcagtaacttgagtgacatttctgagttgtgtcattcccgtaaaattcctctgattgttgatgaag 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25584882 gttttcatcacttcacctacttatcatggtatttgcagtaacttgagtgacatttccgagttgtgtcattcccgtaaaattcctctgattgttgatgaag 25584981  T
Q  220 ctcacggtgcacatctaggatttcattctgaactgcctagctcagccctccagcaaggggctgatctaactgtacagtctact 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25584982 ctcacggtgcacatctaggatttcattctgaactgcctagctcagccctccagcaaggggctgatctaactgtacagtctact 25585064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 54 - 302
Target Start/End: Original strand, 25589699 - 25589947
Alignment:
Q  54 tggttggtgttgcaggtattgagtgctatccaggaactagaattggaaggnnnnnnngcagcagcagttttcatcacttcacctacttatcatggtattt 153  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||| |||||| |||    
T  25589699 tggttgttgttgcaggtattgaatgctatccaggaactagaattggaaggaaagaaagcagcagcagttttcatcacttcacctacttaccatggtgttt 25589798  T
Q  154 gcagtaacttgagtgacatttctgagttgtgtcattcccgtaaaattcctctgattgttgatgaagctcacggtgcacatctaggatttcattctgaact 253  Q
    |||||||||||||||| |||||||  ||||||||||| |||||||||||| ||||||||||||||||||| || |||||||||||||| |||||||||||    
T  25589799 gcagtaacttgagtgatatttctgctttgtgtcattctcgtaaaattcctttgattgttgatgaagctcatggagcacatctaggattacattctgaact 25589898  T
Q  254 gcctagctcagccctccagcaaggggctgatctaactgtacagtctact 302  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25589899 gcctagctcagccctccagcaaggggctgatctaactgtacaatctact 25589947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 54 - 302
Target Start/End: Original strand, 25599351 - 25599599
Alignment:
Q  54 tggttggtgttgcaggtattgagtgctatccaggaactagaattggaaggnnnnnnngcagcagcagttttcatcacttcacctacttatcatggtattt 153  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||| |||||| |||    
T  25599351 tggttgttgttgcaggtattgaatgctatccaggaactagaattggaaggaaagaaagcagcagcagttttcatcacttcacctacttaccatggtgttt 25599450  T
Q  154 gcagtaacttgagtgacatttctgagttgtgtcattcccgtaaaattcctctgattgttgatgaagctcacggtgcacatctaggatttcattctgaact 253  Q
    |||||||||||||||| |||||||  ||||||||||| |||||||||||| ||||||||||||||||||| || |||||||||||||| |||||||||||    
T  25599451 gcagtaacttgagtgatatttctgctttgtgtcattctcgtaaaattcctttgattgttgatgaagctcatggagcacatctaggattacattctgaact 25599550  T
Q  254 gcctagctcagccctccagcaaggggctgatctaactgtacagtctact 302  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25599551 gcctagctcagccctccagcaaggggctgatctaactgtacaatctact 25599599  T

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