View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3061_low_22 (Length: 299)
Name: NF3061_low_22
Description: NF3061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3061_low_22 |
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| [»] scaffold1557 (1 HSPs) |
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Alignment Details
Target: scaffold1557 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold1557
Description:
Target: scaffold1557; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 310 - 463
Alignment:
| Q |
18 |
tgttttggtgagacaaataaaaaataacaagcaaaagagtnnnnnnnnnnnnnnttgaattcccggtagccaaaaatagagcagatacgtggtccaatac |
117 |
Q |
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| T |
310 |
tgttttggtgagagaaataaaaaataacaagcaaaagagtaaaaaaaaaaaaacttgaattcccggtagccaaaaatagagcagatacgtggtccaatac |
409 |
T |
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| Q |
118 |
atgcgcgtgtgttaagaagagagtgtcagagcgtttgttggtagcaattctctt |
171 |
Q |
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| T |
410 |
atgcgcgtgtgttaagaagagagtgtcagagcgtttgttggtatcaattctctt |
463 |
T |
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