View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3061_low_25 (Length: 270)
Name: NF3061_low_25
Description: NF3061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3061_low_25 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 40770710 - 40770945
Alignment:
| Q |
12 |
acatcatcaatcattaagcatacaacattttccattcacaatggaatcctgttcttcatcaatatgtgaactaccaacaaatcaaagatcagtcaataac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40770710 |
acatcatcaatcattaagcatacaacattttccattcacaatggaatcctgttcttcatcaatatgtgaactaccaacaaatcaaagatcagtcaataac |
40770809 |
T |
|
| Q |
112 |
agcatagctccatttatgacttctgaatcaaatagaccatatttcatagcagtatgcacagaggtattactacttcgacttataacaatatttgcacaat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40770810 |
agcatagctccatttatgacttctgaatcaaatagaccatatttcatagcagtatgcacagaggtattactacttcgacttataacaatatttgcacaat |
40770909 |
T |
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| Q |
212 |
tttttcatgtcattagactaacattgttttaattat |
247 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
40770910 |
tttttcatgtcattagactaacattgttttaattat |
40770945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 8332369 - 8332134
Alignment:
| Q |
12 |
acatcatcaatcattaagcatacaacattttccattcacaatggaatcctgttcttcatcaatatgtgaactaccaacaaatcaaagatcagtcaataac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8332369 |
acatcatcaatcattaagcatacaacattttccattcacaatggaatcctgttcttcatcaatatgtgaactaccaacaaatcaaagatcagtcaataac |
8332270 |
T |
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| Q |
112 |
agcatagctccatttatgacttctgaatcaaatagaccatatttcatagcagtatgcacagaggtattactacttcgacttataacaatatttgcacaat |
211 |
Q |
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| T |
8332269 |
agcatagctccatttatgacttctgaatcaaatagaccatatttcatagcagtatgcacagaggtattactacttcgacttataacaatatttgcacaat |
8332170 |
T |
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| Q |
212 |
tttttcatgtcattagactaacattgttttaattat |
247 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
8332169 |
tttttaatgtcattagactaacattgttttaattat |
8332134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 179
Target Start/End: Original strand, 17020528 - 17020657
Alignment:
| Q |
50 |
caatggaatcctgttcttcatcaatatgtgaactaccaacaaatcaaagatcagtcaataacagcatagctccatttatgacttctgaatcaaatagacc |
149 |
Q |
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|||||||||| | ||||||||||| ||||||||||| ||||||||||||||| ||| ||||||||||||||| |||||||||||| | ||| |||| |
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| T |
17020528 |
caatggaatcaagctcttcatcaattagtgaactaccacaaaatcaaagatcagttaattgcagcatagctccattaatgacttctgaaactaatcgacc |
17020627 |
T |
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| Q |
150 |
atatttcatagcagtatgcacagaggtatt |
179 |
Q |
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| T |
17020628 |
tttcttcattgcagtttgcacagaggtatt |
17020657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 50 - 185
Target Start/End: Complemental strand, 119473 - 119338
Alignment:
| Q |
50 |
caatggaatcctgttcttcatcaatatgtgaactaccaacaaatcaaagatcagtcaataacagcatagctccatttatgacttctgaatcaaatagacc |
149 |
Q |
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|||||||||| |||||||||||| ||||||||||| ||||||||||||||| ||| ||||||||||||||| |||||||||||| | ||| |||| |
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| T |
119473 |
caatggaatcaatttcttcatcaatcagtgaactaccacaaaatcaaagatcagttaattgcagcatagctccattaatgacttctgaaactaatcgacc |
119374 |
T |
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| Q |
150 |
atatttcatagcagtatgcacagaggtattactact |
185 |
Q |
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| ||| | ||||| |||||||||||||||||||| |
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| T |
119373 |
tttcttcgttgcagtttgcacagaggtattactact |
119338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 19777177 - 19777307
Alignment:
| Q |
52 |
atggaatcctgttcttcatcaatatgtgaactaccaacaaatcaaagatcagtcaataacagcatagctccatttatgacttctgaatcaaatagaccat |
151 |
Q |
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||||| ||| |||||||||| ||| ||||| ||| ||| |||||| |||||| ||| ||||||||||||||| ||||| ||||| || |||||||||| |
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| T |
19777177 |
atggagtccagttcttcatccataagtgaaatacaaaccaatcaaccatcagtaaattgcagcatagctccattgatgacatctgagtctaatagaccat |
19777276 |
T |
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| Q |
152 |
atttcatagcagtatgcacagaggtattact |
182 |
Q |
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|||||| ||| | ||||||||||||||||| |
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| T |
19777277 |
ttttcattgcaatctgcacagaggtattact |
19777307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 144125 - 143996
Alignment:
| Q |
49 |
acaatggaatcctgttcttcatcaatatgtgaactaccaacaaatcaaagatcagtcaataacagcatagctccatttatgacttctgaatcaaatagac |
148 |
Q |
| |
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||||||||||| ||||||||| ||| ||||||||||| ||||||||||||||| ||| ||||||||||||| | |||||||||||| ||||||| |
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| T |
144125 |
acaatggaatcaagttcttcattaattagtgaactaccacaaaatcaaagatcagttaattgcagcatagctccaatgatgacttctgaaagtaatagac |
144026 |
T |
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| Q |
149 |
catatttcatagcagtatgcacagaggtat |
178 |
Q |
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| T |
144025 |
ctttcttcattgcagtttgcacagaggtat |
143996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 18059832 - 18059703
Alignment:
| Q |
49 |
acaatggaatcctgttcttcatcaatatgtgaactaccaacaaatcaaagatcagtcaataacagcatagctccatttatgacttctgaatcaaatagac |
148 |
Q |
| |
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||||||||||| ||||||||||||| ||||||||||| ||||||||||||||| ||| |||||||||||| | |||||||||||| ||||||| |
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| T |
18059832 |
acaatggaatcaagttcttcatcaattagtgaactaccacaaaatcaaagatcagttaattgtagcatagctccaatgatgacttctgaaagtaatagac |
18059733 |
T |
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| Q |
149 |
catatttcatagcagtatgcacagaggtat |
178 |
Q |
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| T |
18059732 |
ctttcttcattgcagtttgcacagaggtat |
18059703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 4255255 - 4255183
Alignment:
| Q |
111 |
cagcatagctccatttatgacttctgaatcaaatagaccatatttcatagcagtatgcacagaggtattacta |
183 |
Q |
| |
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||||| ||||||||| ||||| |||||| |||||||| | |||| |||| || |||||||||||||||||| |
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| T |
4255255 |
cagcagagctccattgatgacaattgaatccaatagaccttctttcttagctgtttgcacagaggtattacta |
4255183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 21898225 - 21898153
Alignment:
| Q |
111 |
cagcatagctccatttatgacttctgaatcaaatagaccatatttcatagcagtatgcacagaggtattacta |
183 |
Q |
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||||| ||||||||| ||||| |||||| |||||||| | |||| |||| || |||||||||||||||||| |
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| T |
21898225 |
cagcagagctccattgatgacaattgaatccaatagaccttctttcttagctgtttgcacagaggtattacta |
21898153 |
T |
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