View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3061_low_28 (Length: 254)
Name: NF3061_low_28
Description: NF3061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3061_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 39999285 - 39999530
Alignment:
| Q |
1 |
atgaagtaatgccattgctatttgactatatggaaatatgatactataaaaggatgggatgtccttctagttcagcattcattctcccctttgaatacga |
100 |
Q |
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| T |
39999285 |
atgaagtaatgccattgctatttgactatatggaaatatgatactataaaaggatgggatgtccttctagttcagcattcattctcccctttgaatacga |
39999384 |
T |
|
| Q |
101 |
acagattttcactagtgccttgcatggttcttttaagtttcgttgtgacttgtcaaggaggcatcctgaggaagaacttctaccagcattcctgccctcg |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39999385 |
acagattttcactagtgccttgcatggtacttttaagtttcgttgtgatttgtcaaggaggcatcctggggaagaacttctaccagcattcctgccctca |
39999484 |
T |
|
| Q |
201 |
ggccaatgacattattatggaaaaaaccctacagcatgtctctgct |
246 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39999485 |
ggccaatgacattattatggaaaaaaccctacagtatgtctctgct |
39999530 |
T |
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