View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3061_low_3 (Length: 643)
Name: NF3061_low_3
Description: NF3061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3061_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 16 - 627
Target Start/End: Complemental strand, 30467918 - 30467320
Alignment:
| Q |
16 |
aacctgtgaagtgatgacgcccccacttttaaacacatgcccttatcgtctctcatcgaagtatgtatgtatgaatgtatgtatgcatggcaaaggaaat |
115 |
Q |
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| T |
30467918 |
aacctgtgaagtgatgacgcccccatttttaaacacatacccttatcgtctctcatcgaagtatgtatgtatgtatg------------gcgaaggaaat |
30467831 |
T |
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| Q |
116 |
ttagtaccggttgtaagtcgaagaagtgaccgggagcaggaggggtgctaatgccgtgatctgctttacacatgccatggccggggattggacatccaaa |
215 |
Q |
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| T |
30467830 |
ttagtaccggttgtaagtcgaagaagtgaccgggagcaggaggggtgctaatgccgtgatctgctttacacatgccatggccggggattggacatccaaa |
30467731 |
T |
|
| Q |
216 |
tgatggtctctgcatgttatgttattttcctctatggtcagtcagccaaacttatatatggagtatagtttgtgtatgtgtttgtgagtaaatatatatt |
315 |
Q |
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| T |
30467730 |
tgatggtctctgcatgttatgttattttcctctatggtcagtcagccaaacttatatatggagtatagtttgtgtatgtgtttgtgagtaaatatatatt |
30467631 |
T |
|
| Q |
316 |
cgacaacatacataattatgtgctatatttatatatgttggtaaatatgacaatactaaaatttgtatactgtcaatcttgtctttaaaaaggatccaaa |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30467630 |
cgacaacatacataattatgtgctatatttatatatgttggtaaatatgacaatact--aatttgtatactgtcaatcttgtctttaaaaaggatccaaa |
30467533 |
T |
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| Q |
416 |
attcagagaagaaaacaacgtgcatggctccaaaa-agtaaagtaatgtaatgaatagttaccactgttgtcggaggtggtgggaaacaatgtgttcctg |
514 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30467532 |
attcagagaagaaaacaacgtgcatggctccaaaatagtaaagtgatgtaatgaatagttaccactgttgtcagaggtggtgggaaacaatgtgttcctg |
30467433 |
T |
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| Q |
515 |
cccggattattgcggttgttggagtctgttgatcaacggtcaaagaaatgcatcacacactttagatagacagatcaaggaaataacttgaactataatc |
614 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30467432 |
cccggattattgcggttgttggagtctgttgatcaacggtcaaagaaatacatcacacactttagatagacagatcgaggaaataacttgaactataatc |
30467333 |
T |
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