View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3061_low_34 (Length: 244)

Name: NF3061_low_34
Description: NF3061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3061_low_34
NF3061_low_34
[»] chr8 (10 HSPs)
chr8 (1-244)||(15285333-15285576)
chr8 (1-244)||(15465702-15465945)
chr8 (3-244)||(15314722-15314952)
chr8 (3-244)||(15495091-15495321)
chr8 (59-242)||(15303850-15304042)
chr8 (59-242)||(15484219-15484411)
chr8 (145-244)||(15447563-15447662)
chr8 (3-152)||(15298622-15298761)
chr8 (3-152)||(15478991-15479130)
chr8 (19-48)||(15447665-15447694)


Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 15285576 - 15285333
Alignment:
Q  1 atgaagccaaggtcgttataacccaattgatactccatatgtgccacctgtatctatctatatatcatgcatccaacgtaactaattacaatatcttaaa 100  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15285576 atgaacccaaggttgttataacccaattgatactccatatgtgccacctgtatctatctatatatcatgcatccaacgtaactaattacaatatcttaaa 15285477  T
Q  101 ccttcgtatctactcataacatggtgagatctttctcctcccaaaatgcacccctctctctattattttcagttttaatcatattaaatataataatatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15285476 ccttcgtatctactcataacatggtgagatctttctcctcccaaaatgcacccctctctctattattttcagttttaatcatattaaatataataatatg 15285377  T
Q  201 tcagacaaatgcttcttgcaacataaaagacaaacaaatactcc 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  15285376 tcagacaaatgcttcttgcaacataaaagacaaacaaatactcc 15285333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 15465945 - 15465702
Alignment:
Q  1 atgaagccaaggtcgttataacccaattgatactccatatgtgccacctgtatctatctatatatcatgcatccaacgtaactaattacaatatcttaaa 100  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15465945 atgaacccaaggttgttataacccaattgatactccatatgtgccacctgtatctatctatatatcatgcatccaacgtaactaattacaatatcttaaa 15465846  T
Q  101 ccttcgtatctactcataacatggtgagatctttctcctcccaaaatgcacccctctctctattattttcagttttaatcatattaaatataataatatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15465845 ccttcgtatctactcataacatggtgagatctttctcctcccaaaatgcacccctctctctattattttcagttttaatcatattaaatataataatatg 15465746  T
Q  201 tcagacaaatgcttcttgcaacataaaagacaaacaaatactcc 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  15465745 tcagacaaatgcttcttgcaacataaaagacaaacaaatactcc 15465702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 15314952 - 15314722
Alignment:
Q  3 gaagccaaggtcgttataacccaattgatactccatatgtgccacctgtatctatctatatatcatgcatccaacgta-actaattacaatatcttaaac 101  Q
    ||||||||||||||||  |||||| ||| ||||||||||||||||||          |||||| | |||||||| ||| |||||||||||||||||||||    
T  15314952 gaagccaaggtcgtta--acccaactgacactccatatgtgccacct----------atatataaggcatccaaggtagactaattacaatatcttaaac 15314865  T
Q  102 cttcgtatctactcataacatggtgagatctttctcctcccaaaatgcacccctctctctattattttcagttttaatcatattaaatataataatatgt 201  Q
    |||  |||||| | ||||||||||||||| | |||||||||||||||||||  ||||||||||||||||| || |||| |||||||||||| ||||||||    
T  15314864 ctttatatctagtgataacatggtgagatttatctcctcccaaaatgcaccattctctctattattttcatttataataatattaaatatagtaatatgt 15314765  T
Q  202 cagacaaatgcttcttgcaacataaaagacaaacaaatactcc 244  Q
     ||||||||||||||||||||  ||||||||||||||||||||    
T  15314764 gagacaaatgcttcttgcaaccaaaaagacaaacaaatactcc 15314722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 15495321 - 15495091
Alignment:
Q  3 gaagccaaggtcgttataacccaattgatactccatatgtgccacctgtatctatctatatatcatgcatccaacgta-actaattacaatatcttaaac 101  Q
    ||||||||||||||||  |||||| ||| ||||||||||||||||||          |||||| | |||||||| ||| |||||||||||||||||||||    
T  15495321 gaagccaaggtcgtta--acccaactgacactccatatgtgccacct----------atatataaggcatccaaggtagactaattacaatatcttaaac 15495234  T
Q  102 cttcgtatctactcataacatggtgagatctttctcctcccaaaatgcacccctctctctattattttcagttttaatcatattaaatataataatatgt 201  Q
    |||  |||||| | ||||||||||||||| | |||||||||||||||||||  ||||||||||||||||| || |||| |||||||||||| ||||||||    
T  15495233 ctttatatctagtgataacatggtgagatttatctcctcccaaaatgcaccattctctctattattttcatttataataatattaaatatagtaatatgt 15495134  T
Q  202 cagacaaatgcttcttgcaacataaaagacaaacaaatactcc 244  Q
     ||||||||||||||||||||  ||||||||||||||||||||    
T  15495133 gagacaaatgcttcttgcaaccaaaaagacaaacaaatactcc 15495091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 59 - 242
Target Start/End: Complemental strand, 15304042 - 15303850
Alignment:
Q  59 tatatatcatgcatccaacgta-actaattacaatatcttaaaccttcgtatctactcata--acatggtgagatctttctcctcccaaaatgcacccct 155  Q
    ||||||| ||||||| || ||| ||||||||||||||| ||||||||| |||||| | |||  |||||||||||| | ||||||| ||||||||||||||    
T  15304042 tatatatgatgcatctaaggtagactaattacaatatcataaaccttcatatctagtgatataacatggtgagatttatctcctctcaaaatgcacccct 15303943  T
Q  156 ctctctattattttcagttttaatcatattaaatataa------taatatgtcagacaaatgcttcttgcaacataaaagacaaacaaatact 242  Q
    ||||||||| |||||| || ||||||||||||||||||      |||||||| |||||||| |||||||||||  ||||||||||||||||||    
T  15303942 ctctctattgttttcatttgtaatcatattaaatataaatatagtaatatgtgagacaaatacttcttgcaaccaaaaagacaaacaaatact 15303850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 59 - 242
Target Start/End: Complemental strand, 15484411 - 15484219
Alignment:
Q  59 tatatatcatgcatccaacgta-actaattacaatatcttaaaccttcgtatctactcata--acatggtgagatctttctcctcccaaaatgcacccct 155  Q
    ||||||| ||||||| || ||| ||||||||||||||| ||||||||| |||||| | |||  |||||||||||| | ||||||| ||||||||||||||    
T  15484411 tatatatgatgcatctaaggtagactaattacaatatcataaaccttcatatctagtgatataacatggtgagatttatctcctctcaaaatgcacccct 15484312  T
Q  156 ctctctattattttcagttttaatcatattaaatataa------taatatgtcagacaaatgcttcttgcaacataaaagacaaacaaatact 242  Q
    ||||||||| |||||| || ||||||||||||||||||      |||||||| |||||||| |||||||||||  ||||||||||||||||||    
T  15484311 ctctctattgttttcatttgtaatcatattaaatataaatatagtaatatgtgagacaaatacttcttgcaaccaaaaagacaaacaaatact 15484219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 15447662 - 15447563
Alignment:
Q  145 aatgcacccctctctctattattttcagttttaatcatattaaatataataatatgtcagacaaatgcttcttgcaacataaaagacaaacaaatactcc 244  Q
    |||||||| || ||||||||| | ||| || || ||||||  |||||| |||||||| ||| ||||||||||||||||  ||||||||||||||||||||    
T  15447662 aatgcaccactttctctattactatcatttgtattcatatataatatagtaatatgtgagataaatgcttcttgcaaccaaaaagacaaacaaatactcc 15447563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 15298761 - 15298622
Alignment:
Q  3 gaagccaaggtcgttataacccaattgatactccatatgtgccacctgtatctatctatatatcatgcatccaacgta-actaattacaatatcttaaac 101  Q
    ||||||||||||||||  |||||| ||| ||||||||||||||||||          |||||| |||||| ||| ||| |||||||||||||||||||||    
T  15298761 gaagccaaggtcgtta--acccaactgacactccatatgtgccacct----------atatataatgcattcaaggtagactaattacaatatcttaaac 15298674  T
Q  102 cttcgtatctactcataaca-tggtgagatctttctcctcccaaaatgcacc 152  Q
    |||| |||||| | |||||| |||| |||| | |||||| ||||||||||||    
T  15298673 cttcatatctagtgataacattggtcagatttatctccttccaaaatgcacc 15298622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 15479130 - 15478991
Alignment:
Q  3 gaagccaaggtcgttataacccaattgatactccatatgtgccacctgtatctatctatatatcatgcatccaacgta-actaattacaatatcttaaac 101  Q
    ||||||||||||||||  |||||| ||| ||||||||||||||||||          |||||| |||||| ||| ||| |||||||||||||||||||||    
T  15479130 gaagccaaggtcgtta--acccaactgacactccatatgtgccacct----------atatataatgcattcaaggtagactaattacaatatcttaaac 15479043  T
Q  102 cttcgtatctactcataaca-tggtgagatctttctcctcccaaaatgcacc 152  Q
    |||| |||||| | |||||| |||| |||| | |||||| ||||||||||||    
T  15479042 cttcatatctagtgataacattggtcagatttatctccttccaaaatgcacc 15478991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 15447694 - 15447665
Alignment:
Q  19 taacccaattgatactccatatgtgccacc 48  Q
    ||||||||||||||||||||||||||||||    
T  15447694 taacccaattgatactccatatgtgccacc 15447665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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