View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3061_low_4 (Length: 485)
Name: NF3061_low_4
Description: NF3061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3061_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 33415608 - 33415845
Alignment:
| Q |
17 |
agttgggagataagctggacaaaactatgggggtccatagggtgtatttaaaattactcccaccaattccatgcaagaggatacagacataggtaggatg |
116 |
Q |
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| T |
33415608 |
agttgggagataagctggacaaaactatgggggtccatagggtgtatttaaaattactcccaccaatgccatgcaagaggatacagacatgggtaggatg |
33415707 |
T |
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| Q |
117 |
aggtttcaattaaattatcaaccttaaatgcaatctgtggacattttagatgtcctcctattatgattgaaatcaatgtcttactattggtacaataatt |
216 |
Q |
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| T |
33415708 |
aggtttcaattaaattatcaaccttaaatgcaatctgtggacattttagatgtcctcctattaagattgaaatcaatgccttactattggtacaataatt |
33415807 |
T |
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| Q |
217 |
ataatgagtttttggacaatgattgtatgttaaattaa |
254 |
Q |
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| T |
33415808 |
ataatgagtttttggacaatgattgtatgttaaattaa |
33415845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 250 - 476
Target Start/End: Original strand, 33415879 - 33416105
Alignment:
| Q |
250 |
attaagacttgcttataaggaaattatagcttatactattgcttaccgagagataaatgaaggatgcaatgaggaaagtccaaaaacgaccaaggtgagc |
349 |
Q |
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| T |
33415879 |
attaagacttgcttataagaaagttatagcatatactattgcttaccgagagataaatgaaggatgcaatgaggaaagtccaaaaacgaccaaggtgagc |
33415978 |
T |
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| Q |
350 |
atcagcaacataagcacctaaaataggtgtcatccaaatggtcccaacccaattggtcacattgttactagcagtcactgttccttggtgaagtttcttt |
449 |
Q |
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| T |
33415979 |
atcagcaacataagcacctaaaataggtgtcatccaaatggtcccaacccaattggtcacattgttactagcagtcactgttccttggtgaagtttcttt |
33416078 |
T |
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| Q |
450 |
gtgaataagaggatcaaatttgatgat |
476 |
Q |
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| T |
33416079 |
gtgaataagaggatcaaatttgatgat |
33416105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 476
Target Start/End: Complemental strand, 15727969 - 15727844
Alignment:
| Q |
351 |
tcagcaacataagcacctaaaataggtgtcatccaaatggtcccaacccaattggtcacattgttactagcagtcactgttccttggtgaagtttctttg |
450 |
Q |
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| T |
15727969 |
tcagcaacataagcacccaatattggagtgatccaaatggtaccaacccaattggtaacattggtagaagaagtcacagtaccttgatgaagcttcttta |
15727870 |
T |
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| Q |
451 |
tgaataagaggatcaaatttgatgat |
476 |
Q |
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| T |
15727869 |
ttaaatataagatcaaatttgatgat |
15727844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 324 - 476
Target Start/End: Complemental strand, 15735572 - 15735420
Alignment:
| Q |
324 |
aaagtccaaaaacgaccaaggtgagcatcagcaacataagcacctaaaataggtgtcatccaaatggtcccaacccaattggtcacattgttactagcag |
423 |
Q |
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| T |
15735572 |
aaagtccaataacggccaaggtaggtatcagcaacataagcacctaatattggagtgatccacatggtgccagcccaattggtgacattggtagaagagg |
15735473 |
T |
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| Q |
424 |
tcactgttccttggtgaagtttctttgtgaataagaggatcaaatttgatgat |
476 |
Q |
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| T |
15735472 |
tcacagtaccttgatgaagcttatttgttaaatataagatcaaatttgatgat |
15735420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 324 - 476
Target Start/End: Complemental strand, 15764738 - 15764586
Alignment:
| Q |
324 |
aaagtccaaaaacgaccaaggtgagcatcagcaacataagcacctaaaataggtgtcatccaaatggtcccaacccaattggtcacattgttactagcag |
423 |
Q |
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| T |
15764738 |
aaagtccaatagcggccaagatgagcatcagcaatgtaagcacctaatattggagtcataaaaatggtgccaatccaattggtgacattgttagaagagg |
15764639 |
T |
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| Q |
424 |
tcactgttccttggtgaagtttctttgtgaataagaggatcaaatttgatgat |
476 |
Q |
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| T |
15764638 |
tgacagtgccttggtgaagcttctttgtcaaatagacaaacaaatttgatgat |
15764586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 476
Target Start/End: Complemental strand, 15778493 - 15778332
Alignment:
| Q |
315 |
gcaatgaggaaagtccaaaaacgaccaaggtgagcatcagcaacataagcacctaaaataggtgtcatccaaatggtcccaacccaattggtcacattgt |
414 |
Q |
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| T |
15778493 |
gcaatgacaaaagtccaatagcgaccaaggtgagaatcagcaacataagcacctattatgggagtaataaaaacagttccaacccaattgttgacattgt |
15778394 |
T |
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| Q |
415 |
tactagcagtcactgttccttggtgaagtttctttgtgaataagaggatcaaatttgatgat |
476 |
Q |
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| T |
15778393 |
tggaagaggtgacagtgccctggtgaagtttctttgtcagatataggatcaaatttgatgat |
15778332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 415
Target Start/End: Complemental strand, 15753604 - 15753513
Alignment:
| Q |
324 |
aaagtccaaaaacgaccaaggtgagcatcagcaacataagcacctaaaataggtgtcatccaaatggtcccaacccaattggtcacattgtt |
415 |
Q |
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| T |
15753604 |
aaagtccaatagcgaccaagatgagcatcagcaatgtaagcacctaatattggagtcataaaaacagtgccaacccaattgttgacattgtt |
15753513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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