View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3061_low_42 (Length: 225)
Name: NF3061_low_42
Description: NF3061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3061_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 82 - 185
Target Start/End: Original strand, 41842009 - 41842112
Alignment:
| Q |
82 |
gaagacaaatcgataacattcgggaagatagaaggaatagaaattgatcgatagaataatttaattgataaagaaacggaatgattatcaaatgataaag |
181 |
Q |
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| T |
41842009 |
gaagacaaatcgataacattctggaagatagaaggaatagaaattgatcgatagaataatttaattgataaagaaacggaatgattatcaaatgataaag |
41842108 |
T |
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| Q |
182 |
aaat |
185 |
Q |
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|||| |
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| T |
41842109 |
aaat |
41842112 |
T |
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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 35781523 - 35781579
Alignment:
| Q |
128 |
atcgatagaataatttaattgataaagaaacggaatgattatcaaatgataaagaaa |
184 |
Q |
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| T |
35781523 |
atcgatagaatgatttaattgataaagaaacggaatgattatcaaatgataaagaaa |
35781579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 4889873 - 4889914
Alignment:
| Q |
143 |
taattgataaagaaacggaatgattatcaaatgataaagaaa |
184 |
Q |
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| T |
4889873 |
taattgataaagaaatggaatgattatcaaatgataaagaaa |
4889914 |
T |
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