View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3061_low_8 (Length: 449)
Name: NF3061_low_8
Description: NF3061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3061_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 10147467 - 10147848
Alignment:
| Q |
1 |
tacaatcaataatttgcctctgaatatagattggctattgcaaaaaataagttctttgtaatctctaaatggtagcagcatgcgaattcttagccgtcct |
100 |
Q |
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| T |
10147467 |
tacaatcaataatttgcctttgaatatagattggctattgcaaaaaataagttctttgtaatctctaaatggaagcagcatgcgaattcttagccgtcct |
10147566 |
T |
|
| Q |
101 |
ttttcttgttcaaattaggttttggacccaccatttatgcctatctttagtgactagattatattaaaataaaatattgcctcaaatgctataaacttta |
200 |
Q |
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| T |
10147567 |
ttttcttgttcaaattaggttttggacccaccatttatgcctatctttagtgactagattatattaaaatac-----tgcctcaaatgctataaacttta |
10147661 |
T |
|
| Q |
201 |
taactttttaacattatggaacccaaataaatgctc------nnnnnnngaggtaggaaatacataataggattagaacattgagcatggctcaaatatc |
294 |
Q |
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| T |
10147662 |
taacttttcaacattatggaacccaaataaatgctctttttttttttttgaggtaggaaatacataataggattagaacattgagcatggctcaaatatc |
10147761 |
T |
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| Q |
295 |
ttaacccactcacacaaatacaaaatgtttacagnnnnnnnaacatgtttcggaggatattttataacttttaaattttataatttg |
381 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10147762 |
ttaacccactcacacaaatacaaaatgtttacagtttttttaacgtgttttggaggatattttataacttttaaattttataatttg |
10147848 |
T |
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