View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3061_low_9 (Length: 426)
Name: NF3061_low_9
Description: NF3061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3061_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 41479920 - 41480139
Alignment:
| Q |
5 |
gaggagcacagaatataattggatttaatctacggtccaaatttattaaaattaaaaatagaacatctatactttcccacatacaaccattcctctatct |
104 |
Q |
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| T |
41479920 |
gaggaacacaaaatataattggatttaatctatggtccaaatttattaaaattaaaaatagaacatctatactttcccacatacaaccatgcctctatct |
41480019 |
T |
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| Q |
105 |
cttctccatttgggtactctccaactaaacaaaaatctgcacaagatggttgttggaaatttaaaaaactgacaaaaaagtgtttgaaggttcaaacttc |
204 |
Q |
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| T |
41480020 |
cttctccatttgggtactctccaactaaacaaaaatctgcacaagatggttgttggaaatttaaaaaactgacaaaaaagtgtttgaaggttcaaacttc |
41480119 |
T |
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| Q |
205 |
attatttcattttatacaat |
224 |
Q |
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| T |
41480120 |
attatttcattttatacaat |
41480139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 255 - 411
Target Start/End: Original strand, 41480147 - 41480303
Alignment:
| Q |
255 |
ttccagcatataggcttcaggattgcaagcaacattccagcattgacaattagtttccacaattgctcaacaagattaagatgatccttcttcaatttgg |
354 |
Q |
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| T |
41480147 |
ttccagcatataggcttcaggattgcaagcaacattccagcattgacaattagtttccacaattgctcaacaagattaagatgatccttcttcaatttgg |
41480246 |
T |
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| Q |
355 |
cttttatgcttgagattatgtatataaattctcttgcagcagcagcaacttctaatt |
411 |
Q |
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| T |
41480247 |
cttttatgcttgagattatgtatataaattctcttgcagcagcagcaacttctaatt |
41480303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 44876878 - 44876829
Alignment:
| Q |
64 |
agaacatctatactttcccacatacaaccattcctctatctcttctccat |
113 |
Q |
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| T |
44876878 |
agaacatctatactttaccacatacaaccaaacctctatctcttttccat |
44876829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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