View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3062_high_14 (Length: 348)
Name: NF3062_high_14
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 36281830 - 36282044
Alignment:
| Q |
14 |
aaataacgacacttttagaggcataactttataccaaattatgtgtgacagaatatcaaagttagaatgttcaactctagtaagattctgataagcacca |
113 |
Q |
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| T |
36281830 |
aaataacgatacttttaaaggcataactttataccaaattatgtgtgacagaatatcaaagttggaatattcaactctagtaagaatctgataagcaccc |
36281929 |
T |
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| Q |
114 |
tttaccaaataaccatcaatggagttttataaccaaactcgtttagttgtcacattgtcctgcnnnnnnnntgttatttaacaaagaaacacattgttcc |
213 |
Q |
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| T |
36281930 |
tttaccaaataaccatcaatgaagttttataaccaaactcgtttatctgtcacgttgtcctgc-aaaaaaatgatatttaacaaagaaccacattgtttc |
36282028 |
T |
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| Q |
214 |
atttaatcctctccca |
229 |
Q |
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| T |
36282029 |
atttaatcctctccca |
36282044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 36282071 - 36282164
Alignment:
| Q |
256 |
cctctccaccgccatcatgcctctccacccccaacctagcctcttcatcacagc-----taacactcctttcaacacagagctcaaatagtcat |
344 |
Q |
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| T |
36282071 |
cctctccaccgccatcatgcctctccacccccaacatagcctcttcatctcagctatagtaacactgctttcaacacaaagctcaaatagtcat |
36282164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 32661749 - 32661787
Alignment:
| Q |
185 |
tgttatttaacaaagaaacacattgttccatttaatcct |
223 |
Q |
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| T |
32661749 |
tgttatctaacaaagaaacacattgttccaattaatcct |
32661787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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