View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3062_high_15 (Length: 348)

Name: NF3062_high_15
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3062_high_15
NF3062_high_15
[»] chr4 (32 HSPs)
chr4 (12-335)||(55505069-55505392)
chr4 (15-269)||(640730-640987)
chr4 (15-170)||(553294-553449)
chr4 (202-315)||(532194-532307)
chr4 (16-169)||(546729-546882)
chr4 (32-269)||(1524513-1524750)
chr4 (119-334)||(53761734-53761949)
chr4 (38-167)||(1545611-1545740)
chr4 (15-170)||(6006142-6006297)
chr4 (36-296)||(1513407-1513667)
chr4 (31-169)||(1552900-1553038)
chr4 (84-169)||(566073-566158)
chr4 (36-169)||(1489491-1489624)
chr4 (36-168)||(12121588-12121720)
chr4 (115-334)||(55908690-55908912)
chr4 (30-168)||(1537898-1538036)
chr4 (14-100)||(1600345-1600431)
chr4 (33-166)||(370760-370886)
chr4 (31-152)||(570182-570303)
chr4 (30-269)||(1548451-1548693)
chr4 (226-295)||(12121458-12121527)
chr4 (103-167)||(1508135-1508199)
chr4 (233-269)||(1600455-1600491)
chr4 (103-167)||(7226015-7226079)
chr4 (32-76)||(7226106-7226150)
chr4 (111-168)||(644742-644799)
chr4 (238-295)||(1519143-1519200)
chr4 (244-297)||(1537766-1537819)
chr4 (12-65)||(3438797-3438850)
chr4 (32-77)||(8187313-8187358)
chr4 (32-76)||(659540-659584)
chr4 (244-296)||(1489361-1489413)
[»] chr1 (5 HSPs)
chr1 (148-325)||(43634858-43635033)
chr1 (192-334)||(19468461-19468603)
chr1 (12-153)||(43634009-43634132)
chr1 (189-282)||(9586631-9586724)
chr1 (32-280)||(9580901-9581154)
[»] chr3 (6 HSPs)
chr3 (15-334)||(51113743-51114065)
chr3 (33-166)||(514861-514994)
chr3 (123-334)||(51764402-51764616)
chr3 (114-334)||(13470694-13470917)
chr3 (33-169)||(51121023-51121159)
chr3 (185-269)||(51120920-51121004)
[»] chr6 (26 HSPs)
chr6 (121-317)||(19632360-19632559)
chr6 (112-317)||(6402772-6402980)
chr6 (112-297)||(14820605-14820793)
chr6 (204-334)||(7119164-7119294)
chr6 (204-334)||(7131642-7131772)
chr6 (190-334)||(6394857-6395001)
chr6 (204-334)||(6432168-6432298)
chr6 (204-317)||(6585216-6585329)
chr6 (190-334)||(7994144-7994288)
chr6 (109-334)||(6426420-6426648)
chr6 (115-271)||(14818297-14818456)
chr6 (204-278)||(10579754-10579828)
chr6 (204-297)||(6410013-6410106)
chr6 (114-334)||(6415880-6416103)
chr6 (190-274)||(9411348-9411432)
chr6 (112-167)||(10579869-10579924)
chr6 (204-334)||(6589285-6589415)
chr6 (204-266)||(14802343-14802405)
chr6 (112-169)||(6603332-6603389)
chr6 (35-155)||(28934884-28935004)
chr6 (15-90)||(9411170-9411245)
chr6 (204-278)||(6596946-6597020)
chr6 (112-169)||(6394776-6394833)
chr6 (204-317)||(6594585-6594698)
chr6 (121-169)||(6585367-6585415)
chr6 (125-169)||(6589453-6589497)
[»] chr8 (7 HSPs)
chr8 (28-269)||(27922336-27922580)
chr8 (21-269)||(32151122-32151373)
chr8 (34-166)||(5767788-5767920)
chr8 (180-297)||(18315272-18315389)
chr8 (34-166)||(14002887-14003019)
chr8 (12-168)||(17628145-17628301)
chr8 (108-169)||(44736443-44736504)
[»] chr2 (3 HSPs)
chr2 (32-269)||(45245112-45245352)
chr2 (115-334)||(1037626-1037848)
chr2 (212-295)||(32785773-32785856)
[»] chr5 (3 HSPs)
chr5 (32-317)||(41889533-41889828)
chr5 (114-278)||(20478100-20478267)
chr5 (39-269)||(41901562-41901795)
[»] scaffold0807 (1 HSPs)
scaffold0807 (204-334)||(1426-1559)
[»] scaffold0041 (1 HSPs)
scaffold0041 (190-269)||(39177-39256)
[»] scaffold0295 (1 HSPs)
scaffold0295 (121-334)||(586-802)
[»] chr7 (5 HSPs)
chr7 (190-297)||(15092150-15092257)
chr7 (190-334)||(10614586-10614730)
chr7 (121-170)||(10170210-10170259)
chr7 (121-170)||(10177735-10177784)
chr7 (112-156)||(15092294-15092338)


Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 12 - 335
Target Start/End: Complemental strand, 55505392 - 55505069
Alignment:
Q  12 atgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  55505392 atgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattgagtcaacaacactagtatgcactttatcacaaccgttcaagttg 55505293  T
Q  112 atctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacatcgctatttttcaataacaaatgcaaaagtcctcgacaattct 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  55505292 atctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacatcgctatttttcaataacaaatgcaaaagtccacgacaattct 55505193  T
Q  212 ttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  55505192 ttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagttgggggactctaaagttcattccaattaggttcactgt 55505093  T
Q  312 tgaacagtaggctaggttcaaatt 335  Q
    ||||||||||||||||||||||||    
T  55505092 tgaacagtaggctaggttcaaatt 55505069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 640730 - 640987
Alignment:
Q  15 aaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatc 114  Q
    |||||||||||| | |  |||||||||||||||||||||||||||||||||||||||||| ||  |||||| |||||||| |||||| || || |||| |    
T  640730 aaaaccaggtggagttactatctttctcaatgatggccttgaaaataccattgagtcaacgacattagcattcactttattacaaccctttaaattgacc 640829  T
Q  115 tctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgac---atcgctatttttcaataacaaatgcaaaagtcctcgacaattct 211  Q
    ||||||| || | |||||||||||| ||| || ||||||||||||| ||| ||   ||  | || || || ||||| ||||||||| || || |||||||    
T  640830 tctcttaattctttgcagttttctaccacatgattcactcccttctttgttacataatgacaatcttccagtaacagatgcaaaagaccacggcaattct 640929  T
Q  212 ttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctc 269  Q
    |||||||||| || |||||| |||| ||||| ||||||| ||||||||||||||||||    
T  640930 ttgaggtcacgtagagtgtttcatcatcaacgtttgtatctgacaagttcaacacctc 640987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 553294 - 553449
Alignment:
Q  15 aaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatc 114  Q
    |||||||||||| |||  ||||||||||||||||| || ||||  |||||||||| |||||||  | ||||||||||||||||||||   ||| | ||||    
T  553294 aaaaccaggtggagctcctatctttctcaatgatgtccgtgaatgtaccattgaggcaacaacatttgcatgcactttatcacaaccccccaaatcgatc 553393  T
Q  115 tctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacatc 170  Q
    ||||| ||||||||||||||||||| ||| || |||||||| || |||||||||||    
T  553394 tctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacatc 553449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 202 - 315
Target Start/End: Original strand, 532194 - 532307
Alignment:
Q  202 cgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaatta 301  Q
    ||||||||||||||||||||||||||  || |||| ||||  ||||||||||||||||||||||||||||||| |||||||  |||||||||||||| ||    
T  532194 cgacaattctttgaggtcacataaagcttttcatcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattccaagta 532293  T
Q  302 ggttcactgttgaa 315  Q
    | |||||| |||||    
T  532294 gattcactcttgaa 532307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 546729 - 546882
Alignment:
Q  16 aaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatct 115  Q
    ||||||| ||| ||| ||||||||||||||||||||||| |||||| ||||||  ||||  |  || ||| |||||||| |||| |  | || |||||||    
T  546729 aaaccagatggagctattatctttctcaatgatggccttaaaaataacattgaagcaacggcattaacattcactttattacaagcccttaaattgatct 546828  T
Q  116 ctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat 169  Q
    ||||||||| |||||||||||||| ||| |||||||||||||||||||||||||    
T  546829 ctcttagttttgtgcagttttctagcacatgtttcactcccttctctgtgacat 546882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 32 - 269
Target Start/End: Complemental strand, 1524750 - 1524513
Alignment:
Q  32 ttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgca 131  Q
    |||||| |||||||||||| ||||| |||| ||||||| ||||||  |||||||| ||||||  ||||||  |||| || |||||||| |||||||||||    
T  1524750 ttatctctctcaatgatggtcttgataatagcattgaggcaacaaagctagcatgaactttacaacaacccctcaaattaatctctctcagttgtgtgca 1524651  T
Q  132 gttttctaacacgtgtttcactcccttctctgtgacatcgctatttttcaataacaaatgcaaaagtcctcgacaattctttgaggtcacataaagtgtt 231  Q
    |||||||| ||| |  ||||||||| ||||||||||||  | | |   ||||||||  |||||||| || |||||| ||| |||| ||| ||| ||||||    
T  1524650 gttttctatcacataattcactcccctctctgtgacataacaactacgcaataacagttgcaaaagcccacgacaactctgtgagatcatatagagtgtt 1524551  T
Q  232 ccatcgtcaacctttgtatatgacaagttcaacacctc 269  Q
     |||| |||||  |||||  |||||| |||||||||||    
T  1524550 tcatcatcaacacttgtacgtgacaaattcaacacctc 1524513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 334
Target Start/End: Complemental strand, 53761949 - 53761734
Alignment:
Q  119 ttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat---cgctatttttcaataacaaatgcaaaagtcctcgacaattctttga 215  Q
    ||||||||||||||||||||  ||| |||||||||||||| || |||||||   | | || ||||| ||| |  |||||||| || ||||||||||| ||    
T  53761949 ttagttgtgtgcagttttcttccacatgtttcactcccttgtccgtgacattatcacaatgtttcagtaatat-tgcaaaagcccacgacaattcttcga 53761851  T
Q  216 ggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaa 315  Q
    | ||||| |  |||||  ||||| ||| || ||| |||||||||||||| ||||||||| ||| |||  |||||||||||||||||| |||||| |||||    
T  53761850 gatcacaga--gtgttttatcgttaactttcgtaaatgacaagttcaacgcctctagcttgggaactacaaagttcattccaattagcttcactcttgaa 53761753  T
Q  316 cagtaggctaggttcaaat 334  Q
    || | ||||| ||||||||    
T  53761752 cactcggctaagttcaaat 53761734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 38 - 167
Target Start/End: Original strand, 1545611 - 1545740
Alignment:
Q  38 ttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttc 137  Q
    ||||||||||||||||||| ||||| | | |  ||| |||  ||||||||||||||||||||||  |||| |||||| |||||||||||||||||||||     
T  1545611 ttctcaatgatggccttgataatactaataaagcaataacattagcatgcactttatcacaacccctcaaattgatcactcttagttgtgtgcagttttt 1545710  T
Q  138 taacacgtgtttcactcccttctctgtgac 167  Q
    || | | | |||||||||||||| ||||||    
T  1545711 taccgcatctttcactcccttctatgtgac 1545740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 6006142 - 6006297
Alignment:
Q  15 aaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatc 114  Q
    |||||||||||| || ||||||||||||||||||||||||| |||||||||  ||||||||||   |||   |||||||| |||| | | ||| || |||    
T  6006142 aaaaccaggtggagcagttatctttctcaatgatggccttgtaaataccatcaagtcaacaacatcagctaccactttatgacaatcctgcaaatttatc 6006241  T
Q  115 tctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacatc 170  Q
    ||||| | |||| ||||||||||||  || ||  |||||||||||| |||||||||    
T  6006242 tctctcaattgtttgcagttttctacgacttgcatcactcccttctttgtgacatc 6006297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 36 - 296
Target Start/End: Complemental strand, 1513667 - 1513407
Alignment:
Q  36 ctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttt 135  Q
    |||||| || |||||||||||||||| || |||| ||| |||   | ||| |||||||  ||||   ||||| ||||||||||| ||||||||||| |||    
T  1513667 ctttcttaacgatggccttgaaaatatcaatgaggcaagaacatcaccattcactttagaacaatatttcaaattgatctctctcagttgtgtgcatttt 1513568  T
Q  136 tctaacacgtgtttcactcccttctctgtgacatcgctatttttcaataacaaatgcaaaagtcctcgacaattctttgaggtcacataaagtgttccat 235  Q
    |||| |||  | ||||||||| |||||||||||   | |  ||||| ||  |  |||||||| || ||||||  ||||||| | || || |||||| |||    
T  1513567 tctagcacaagcttcactcccatctctgtgacaatacaacctttcagtatgagttgcaaaagcccacgacaacactttgagattacgtagagtgtttcat 1513468  T
Q  236 cgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattcc 296  Q
    | ||||| |||||| |||||||||||||||| ||||| | ||| |||  ||||||||||||    
T  1513467 catcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 1513407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 31 - 169
Target Start/End: Complemental strand, 1553038 - 1552900
Alignment:
Q  31 gttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgc 130  Q
    |||||||||||||||||||||||||||||||||| |||  |||||||   |  || |||||||  |||||| ||||| |||||||||||||||||   ||    
T  1553038 gttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagttgcaagc 1552939  T
Q  131 agttttctaacacgtgtttcactcccttctctgtgacat 169  Q
    | ||||||   || || |||||||||||||| |||||||    
T  1552938 aattttctccgacatgcttcactcccttctcggtgacat 1552900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 566073 - 566158
Alignment:
Q  84 atgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat 169  Q
    ||||||||||| |||||| | ||| ||||| ||||| ||||||||||||||||| | || ||||||||||||||||||||| ||||    
T  566073 atgcactttataacaaccctccaacttgatttctctcagttgtgtgcagttttccaccaggtgtttcactcccttctctgtaacat 566158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 1489624 - 1489491
Alignment:
Q  36 ctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttt 135  Q
    |||||| || |||||||||||||||| || |||| ||| |||   | ||||||||| | ||||    ||||| ||||||||||||||||||| ||| |||    
T  1489624 ctttcttaacgatggccttgaaaatatcaatgaggcaagaacatcatcatgcacttgaccacacattttcaaattgatctctcttagttgtgcgcatttt 1489525  T
Q  136 tctaacacgtgtttcactcccttctctgtgacat 169  Q
    |||| ||| || ||||||||||||||||||||||    
T  1489524 tctagcacatgcttcactcccttctctgtgacat 1489491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 168
Target Start/End: Complemental strand, 12121720 - 12121588
Alignment:
Q  36 ctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttt 135  Q
    |||||||||||||||||||||||||| || |||| ||| |||   |  |||||||| |  ||||   ||||| | ||||||||||||||||||||| |||    
T  12121720 ctttctcaatgatggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgcatttt 12121621  T
Q  136 tctaacacgtgtttcactcccttctctgtgaca 168  Q
    |||| ||| || ||||||||| |||||||||||    
T  12121620 tctaccacatgcttcactcccatctctgtgaca 12121588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 334
Target Start/End: Complemental strand, 55908912 - 55908690
Alignment:
Q  115 tctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgac---atcgctatttttcaataacaaatgcaaaagtcctcgacaattct 211  Q
    ||||| ||||||||||||||||| |  || |||||||| || |||||||||||   ||| | ||||| ||  ||||  || ||||| || | ||||||||    
T  55908912 tctctgagttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattct 55908813  T
Q  212 ttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgt 311  Q
    ||||| ||| ||| |||||| |||| |||||   ||||| ||||||||| ||||||||||  |  || ||| ||||||| |||| || ||| |||||| |    
T  55908812 ttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactct 55908713  T
Q  312 tgaacagtaggctaggttcaaat 334  Q
    ||||||||||||||  |||||||    
T  55908712 tgaacagtaggctaaattcaaat 55908690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 168
Target Start/End: Complemental strand, 1538036 - 1537898
Alignment:
Q  30 tgttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtg 129  Q
    ||||| |||||| || |||||||||||||||| || ||||  || |||   | ||| ||||| | |||| |  ||||| ||||||||||||||||| |||    
T  1538036 tgttaactttcttaacgatggccttgaaaatatcaatgaggtaagaacatcatcatccacttgaacacaccttttcaaattgatctctcttagttgagtg 1537937  T
Q  130 cagttttctaacacgtgtttcactcccttctctgtgaca 168  Q
    || ||||||| ||| |  ||||||||||||| |||||||    
T  1537936 catttttctagcacatacttcactcccttctgtgtgaca 1537898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 1600345 - 1600431
Alignment:
Q  14 gaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaac 100  Q
    ||||| ||||||| |||| |||||||||||| ||||||||| ||| |||||| ||| |||||||  |||||| ||||| || |||||    
T  1600345 gaaaatcaggtggagctgctatctttctcaaggatggccttaaaagtaccatcgagacaacaaccttagcattcacttcatgacaac 1600431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 166
Target Start/End: Original strand, 370760 - 370886
Alignment:
Q  33 tatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctctta-gttgtgtgca 131  Q
    ||||||||| |||||||||||||||||||||||||||         |||  ||||||||||| ||||||| | || ||||||||||| | ||||||||||    
T  370760 tatctttctgaatgatggccttgaaaataccattgag--------gctataatgcactttattacaaccgcttaaattgatctctctcaggttgtgtgca 370851  T
Q  132 gttttctaacacgtgtttcactcccttctctgtga 166  Q
    |||||  | ||| || ||||||||| ||| |||||    
T  370852 gtttttcaccacatgcttcactcccatctttgtga 370886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 570182 - 570303
Alignment:
Q  31 gttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgc 130  Q
    |||||||||||||||||||| ||||| |||| ||| ||||||||||   |   |||||||||||  ||    ||||| |||||||| || ||||||||||    
T  570182 gttatctttctcaatgatggtcttgataatatcatcgagtcaacaatatttttatgcactttatagcagttcttcaaattgatctccctcagttgtgtgc 570281  T
Q  131 agttttctaacacgtgtttcac 152  Q
    ||||||||| ||| || |||||    
T  570282 agttttctaccacatgattcac 570303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 269
Target Start/End: Complemental strand, 1548693 - 1548451
Alignment:
Q  30 tgttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtg 129  Q
    ||||||||||||||||||||| ||||||||||||| |||  | |||||   | |||||| || |  |||||| | ||| || || ||||| ||||| | |    
T  1548693 tgttatctttctcaatgatggtcttgaaaataccaatgaagcgacaacatcatcatgcaattgaaaacaaccttccaaattaatttctctcagttgcgag 1548594  T
Q  130 cagttttctaacacgtgtttcactcccttctctgtgacatcgcta-----tttttcaataacaaatgcaaaagtcctcgacaattctttgaggtcacata 224  Q
    |||||||||   |  |||||||||||||||||||||| ||   ||     |||||   |||||| |||||||| || | |||| |||||||| ||||||     
T  1548593 cagttttcttctatatgtttcactcccttctctgtgatatttttacaacgtttttg--taacaagtgcaaaagcccacaacaactctttgagatcacatt 1548496  T
Q  225 aagtgttccatcgtcaacctttgtatatgacaagttcaacacctc 269  Q
     |||||| |||| ||||   |||||| ||||||||||||||||||    
T  1548495 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctc 1548451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 12121527 - 12121458
Alignment:
Q  226 agtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattc 295  Q
    |||||| |||| ||||| ||||||||||||||||||||||| ||||| | ||| |||  |||||||||||    
T  12121527 agtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattc 12121458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 1508199 - 1508135
Alignment:
Q  103 ttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgac 167  Q
    ||||| ||||||||||||||||||||||| ||||||| | | || ||||||||| |||| |||||    
T  1508199 ttcaaattgatctctcttagttgtgtgcatttttctagcgcatgcttcactcccatctcggtgac 1508135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 1600455 - 1600491
Alignment:
Q  233 catcgtcaacctttgtatatgacaagttcaacacctc 269  Q
    ||||||||||| |||||||||||||||||||||||||    
T  1600455 catcgtcaacccttgtatatgacaagttcaacacctc 1600491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 7226079 - 7226015
Alignment:
Q  103 ttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgac 167  Q
    ||||| ||||||||||| |||||  |||||||||||| |||||| |||| ||||||||| |||||    
T  7226079 ttcaaattgatctctctcagttgcttgcagttttctaccacgtgcttcaatcccttctcggtgac 7226015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 7226150 - 7226106
Alignment:
Q  32 ttatctttctcaatgatggccttgaaaataccattgagtcaacaa 76  Q
    |||||||||||||||||||||||||| | ||||||||| ||||||    
T  7226150 ttatctttctcaatgatggccttgaagaaaccattgaggcaacaa 7226106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 644742 - 644799
Alignment:
Q  111 gatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgaca 168  Q
    ||||||||| ||||||||||| ||||| | ||| ||||||||||| ||||| ||||||    
T  644742 gatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgaca 644799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 1519200 - 1519143
Alignment:
Q  238 tcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattc 295  Q
    |||||| |||||| ||||||||||||||||||||| | ||| |||  |||||||||||    
T  1519200 tcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcattc 1519143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 1537819 - 1537766
Alignment:
Q  244 tttgtatatgacaagttcaacacctctagctgggggactctaaagttcattcca 297  Q
    ||||||||||||||||||||||| ||||| | ||| |||  |||||||||||||    
T  1537819 tttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcca 1537766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 3438850 - 3438797
Alignment:
Q  12 atgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccat 65  Q
    |||| ||| |||||| || |||| |||||||||||||||| |||||||||||||    
T  3438850 atgataacgaggtggagcagttacctttctcaatgatggctttgaaaataccat 3438797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 8187358 - 8187313
Alignment:
Q  32 ttatctttctcaatgatggccttgaaaataccattgagtcaacaac 77  Q
    ||||||||||||  |||||||||||||||| ||| |||||||||||    
T  8187358 ttatctttctcagcgatggccttgaaaatatcatcgagtcaacaac 8187313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 659540 - 659584
Alignment:
Q  32 ttatctttctcaatgatggccttgaaaataccattgagtcaacaa 76  Q
    |||||||| |||| |||||||||||||||||||| ||| ||||||    
T  659540 ttatctttttcaacgatggccttgaaaataccatcgaggcaacaa 659584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 1489413 - 1489361
Alignment:
Q  244 tttgtatatgacaagttcaacacctctagctgggggactctaaagttcattcc 296  Q
    ||||||||||||||||||||||| ||||| | ||| |||  ||||||||||||    
T  1489413 tttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 1489361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 6e-68; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 148 - 325
Target Start/End: Original strand, 43634858 - 43635033
Alignment:
Q  148 ttcactcccttctctgtgacatcgctatttttcaataacaaatgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttg 247  Q
    ||||||||||||||||||||||| ||||| |||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43634858 ttcactcccttctctgtgacatcactattattcagtaacaaattcaaaagtccacgacaattctttgaggtcacataaagtgttccatcgtcaacctttg 43634957  T
Q  248 tatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggcta 325  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||| |  ||||||| |||||||||||||||    
T  43634958 tatatgacaagttcaacgcctctagctgggggactctaaaggtcattccaagt--gttcactattgaacagtaggcta 43635033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 192 - 334
Target Start/End: Complemental strand, 19468603 - 19468461
Alignment:
Q  192 caaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttc 291  Q
    ||||||||| | ||| ||||||||| |||||||||||||| |||| ||||||||||||| |||||| ||||||||||| |||| ||| |||  |||||||    
T  19468603 caaaagtccacaacagttctttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttc 19468504  T
Q  292 attccaattaggttcactgttgaacagtaggctaggttcaaat 334  Q
    | ||||| ||| |||||| ||||||||| ||||| ||| ||||    
T  19468503 actccaagtagattcactcttgaacagtgggctaagtttaaat 19468461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 43634009 - 43634132
Alignment:
Q  12 atgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttg 111  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||    
T  43634009 atgaaaacgaggtggcgctattatctttctcaatgatggccttgaaaataccattgag------------------actttatcacaaccgttcaagttg 43634090  T
Q  112 atctctcttagttgtgtgcagttttctaacacgtgtttcact 153  Q
    ||||||||||||||| |||| |||||||||||||| ||||||    
T  43634091 atctctcttagttgtctgcaattttctaacacgtgcttcact 43634132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 9586631 - 9586724
Alignment:
Q  189 atgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggact 282  Q
    |||||||||||| ||||||||| |||||||||||||||||||| |||| | ||| | ||||||||||||||||||||||||||||| |||||||    
T  9586631 atgcaaaagtccacgacaattcattgaggtcacataaagtgtttcatcattaacatctgtatatgacaagttcaacacctctagcttggggact 9586724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 280
Target Start/End: Original strand, 9580901 - 9581154
Alignment:
Q  32 ttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgca 131  Q
    ||||||||||||| |||||||||||| ||||||||||   ||| || |||  ||||||||||| ||||||  |||| |  ||||||   |||||||||||    
T  9580901 ttatctttctcaacgatggccttgaagataccattgacgaaaccacactacgatgcactttataacaacccctcaaatcaatctcttccagttgtgtgca 9581000  T
Q  132 gttttctaacacgtgtttcactcccttctctgtgacatcg---ctatttttcaataacaaatgcaaaagtcctcgacaattctttgaggtcacataaagt 228  Q
     ||||||| |||  | |||||||| || | ||||||| |    |||| ||||| ||| |    ||||||||| ||||||||||||||| ||||||||||     
T  9581001 attttctaccacacgcttcactccattgtttgtgacaccataactatctttcagtaaaaggcacaaaagtccacgacaattctttgagatcacataaagc 9581100  T
Q  229 gttccatcgtcaac--ctttgtatatgacaagttcaacacctctagctggggga 280  Q
    ||| |||| | |||   |||||| |||||||||||||||||||||||| |||||    
T  9581101 gtttcatcattaacttttttgtacatgacaagttcaacacctctagcttgggga 9581154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 334
Target Start/End: Complemental strand, 51114065 - 51113743
Alignment:
Q  15 aaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatc 114  Q
    |||||||||||| |||||||| | ||||||||||||||||||||||| ||||||| ||||||   ||||||||||||||  |||||| || || || |||    
T  51114065 aaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatc 51113966  T
Q  115 tctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacatcg---ctatttttcaataacaaatgcaaaagtcctcgacaattct 211  Q
    |||||||||| |||||| ||||||| ||| || |||||||||||||||||||||| |   | |||||||| |||||  |||||||| || | |||| |||    
T  51113965 tctcttagttttgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaactct 51113866  T
Q  212 ttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgt 311  Q
    | ||| ||||||| |||||| |||| |||||| |||||| ||||||||  |||||||| || | |||  ||  |||||||||||||| ||| |||| | |    
T  51113865 tcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtagcttcagttt 51113766  T
Q  312 tgaacagtaggctaggttcaaat 334  Q
    ||||||||| ||||  |||||||    
T  51113765 tgaacagtaagctaatttcaaat 51113743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 166
Target Start/End: Complemental strand, 514994 - 514861
Alignment:
Q  33 tatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcag 132  Q
    ||||||||||||||||||||||||||||||||||| | |||||||  ||  ||||||||||| ||||||  | || ||||||||||| ||| ||||||||    
T  514994 tatctttctcaatgatggccttgaaaataccattggggcaacaacattataatgcactttattacaacctcttaaattgatctctctcagtcgtgtgcag 514895  T
Q  133 ttttctaacacgtgtttcactcccttctctgtga 166  Q
    ||||  | ||| || ||||||||| |||||||||    
T  514894 tttttcaccacatgcttcactcccgtctctgtga 514861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 123 - 334
Target Start/End: Complemental strand, 51764616 - 51764402
Alignment:
Q  123 ttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat---cgctatttttcaataacaaatgcaaaagtcctcgacaattctttgaggtc 219  Q
    ||||||||||||||| | ||| |||||||||||||||||  ||||||   | | || || || ||| |  |||||||| || | ||||||||||||| ||    
T  51764616 ttgtgtgcagttttcaaccacatgtttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattctttgagatc 51764517  T
Q  220 acataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagt 319  Q
     |||| ||||||  ||| ||||| |||||| |||||||||  |||||||| ||||  || |||  |||||||||||||| ||| |||||| ||||||| |    
T  51764516 gcatagagtgttttatcatcaacttttgtaaatgacaagtctaacacctccagcttcggaactgcaaagttcattccaagtagcttcactcttgaacatt 51764417  T
Q  320 aggctaggttcaaat 334  Q
     || |||||||||||    
T  51764416 cggataggttcaaat 51764402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 334
Target Start/End: Complemental strand, 13470917 - 13470694
Alignment:
Q  114 ctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat--cgctatttttcaa-taacaaatgcaaaagtcctcgacaattc 210  Q
    ||||||||| ||||||||||| |||| ||| |||||||||||||  ||||||||||   |  |   ||||| ||| |  |||||||| || | |||||||    
T  13470917 ctctcttagctgtgtgcagttctctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccacaacaattc 13470818  T
Q  211 tttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactg 310  Q
    |||||| ||| ||| ||||||  ||| | ||||||||||| |||||||||||||||||| || | ||| ||   |||||||||||||| ||| ||||||     
T  13470817 tttgagatcatatagagtgttttatcattaacctttgtatttgacaagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcactt 13470718  T
Q  311 ttgaacagtaggctaggttcaaat 334  Q
    ||  ||| ||||||| ||||||||    
T  13470717 ttttacaataggctaagttcaaat 13470694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 169
Target Start/End: Complemental strand, 51121159 - 51121023
Alignment:
Q  33 tatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcag 132  Q
    |||||||||||| |||| ||||||||| || |||||| ||||||    |||||| |||||||  |||    ||||||||||| |||| | ||||||||||    
T  51121159 tatctttctcaacgatgaccttgaaaagactattgaggcaacaaaatcagcatggactttatagcaatacctcaagttgatcactctcaattgtgtgcag 51121060  T
Q  133 ttttctaacacgtgtttcactcccttctctgtgacat 169  Q
    ||||||| ||| ||||||||||| || | ||||||||    
T  51121059 ttttctaccacatgtttcactcctttttgtgtgacat 51121023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 269
Target Start/End: Complemental strand, 51121004 - 51120920
Alignment:
Q  185 acaaatgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctc 269  Q
    |||| |||||||| || |||||| |||||||| | ||||| ||| || |||| |||||  ||||||  |||||||||||||||||    
T  51121004 acaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctc 51120920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 121 - 317
Target Start/End: Original strand, 19632360 - 19632559
Alignment:
Q  121 agttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat---cgctatttttcaataacaaatgcaaaagtcctcgacaattctttgagg 217  Q
    |||||| |||||||||||| |||||||||||||||||||||||||| ||   | | |||||||| ||| |  |||||||| || | |||||||||||||     
T  19632360 agttgtttgcagttttctaccacgtgtttcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttgaga 19632459  T
Q  218 tcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaaca 317  Q
    ||||| |||||    |||| |||||||||||||| ||||||| |||||||||||||| ||| |||  |||||| ||||||| |||||| ||| |||||||    
T  19632460 tcacaaaaagttgctcatcatcaacctttgtatacgacaagtccaacacctctagcttgggaactagaaagtttattccaagtaggttaactattgaaca 19632559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 112 - 317
Target Start/End: Original strand, 6402772 - 6402980
Alignment:
Q  112 atctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacatcg---ctatttttcaataacaaatgcaaaagtcctcgacaat 208  Q
    |||||||| |||||||| |||||||||| ||| |||||| ||||||| ||||||||||     | || | ||||||| |  | |||||| || | |||||    
T  6402772 atctctctcagttgtgtacagttttctatcacatgtttcgctcccttttctgtgacattataacaatctctcaataatagtttcaaaagcccactacaat 6402871  T
Q  209 tctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcac 308  Q
    |||||||| ||||||| |||||| |||| |||||||| |||| ||||||||||||||| ||||| ||||| |||  |||||| ||||||| ||| |||||    
T  6402872 tctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagtttattccaagtagcttcac 6402971  T
Q  309 tgttgaaca 317  Q
    | |||||||    
T  6402972 tcttgaaca 6402980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 297
Target Start/End: Original strand, 14820605 - 14820793
Alignment:
Q  112 atctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacatcgcta--tttttcaa-taacaaatgcaaaagtcctcgacaat 208  Q
    |||||||| || ||||||||||||| || ||| |||||||| |||||||||||||||||  ||  |||||||| ||| ||  ||||||| || | |||||    
T  14820605 atctctctcagctgtgtgcagttttttaccacatgtttcacacccttctctgtgacatcattacatttttcaagtaataatcgcaaaagcccacaacaat 14820704  T
Q  209 tctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattcca 297  Q
    |||| ||| ||| |||||||||| |||  ||||||||||||| ||| |||||||||||||||| || ||| |||  |||||| ||||||    
T  14820705 tcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgggaactgcaaagttaattcca 14820793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 204 - 334
Target Start/End: Original strand, 7119164 - 7119294
Alignment:
Q  204 acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattagg 303  Q
    ||||||||| ||| ||||||  |||||| |||| |||||||| |||| |||||||||||||||||| |||||| | ||   |||||||||||||| |||     
T  7119164 acaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggtgaacaacaaagttcattccaagtagc 7119263  T
Q  304 ttcactgttgaacagtaggctaggttcaaat 334  Q
    |||||| ||||||||| ||||| ||||||||    
T  7119264 ttcactcttgaacagtgggctaagttcaaat 7119294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 204 - 334
Target Start/End: Original strand, 7131642 - 7131772
Alignment:
Q  204 acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattagg 303  Q
    ||||||||| ||| ||||||  |||||| |||| |||||||| |||| |||||||||||||||||| |||||| | ||   |||||||||||||| |||     
T  7131642 acaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggcgaacaacaaagttcattccaagtagc 7131741  T
Q  304 ttcactgttgaacagtaggctaggttcaaat 334  Q
    |||||| ||||||||| ||||| ||||||||    
T  7131742 ttcactcttgaacagtgggctaagttcaaat 7131772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 334
Target Start/End: Original strand, 6394857 - 6395001
Alignment:
Q  190 tgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagt 289  Q
    |||||||| || | ||||||||||||| ||||| |||| ||| |||| |||||  |||||| |||||||||||||||||| |||| ||| |||  |||||    
T  6394857 tgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagt 6394956  T
Q  290 tcattccaattaggttcactgttgaacagtaggctaggttcaaat 334  Q
    ||||||||  ||| |||||| |||||||| | |||| ||||||||    
T  6394957 tcattccatgtagtttcacttttgaacagaaagctaagttcaaat 6395001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 204 - 334
Target Start/End: Original strand, 6432168 - 6432298
Alignment:
Q  204 acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattagg 303  Q
    |||||||||| || |||||||||||||| |||| |||||  |||||| |||||||||||||||||  |||| ||| |||  |||||||||||||  |||     
T  6432168 acaattctttaagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcattccatgtagc 6432267  T
Q  304 ttcactgttgaacagtaggctaggttcaaat 334  Q
    |||||| ||  ||| ||||||| ||||||||    
T  6432268 ttcacttttatacaataggctaagttcaaat 6432298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 317
Target Start/End: Complemental strand, 6585329 - 6585216
Alignment:
Q  204 acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattagg 303  Q
    |||| |||||||| ||||||| |||||| |||| ||||||||||||| |||||||||||| ||||| | |||||  |||  |||||| ||||||| |||     
T  6585329 acaactctttgagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtagc 6585230  T
Q  304 ttcactgttgaaca 317  Q
    |||||| |||||||    
T  6585229 ttcactcttgaaca 6585216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 334
Target Start/End: Complemental strand, 7994288 - 7994144
Alignment:
Q  190 tgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagt 289  Q
    |||||||||||   ||||||||||||| ||||||| |||||| | || | |||| |||||| ||||| |||||||||||||||||  || |||  |||||    
T  7994288 tgcaaaagtccagaacaattctttgagatcacatatagtgtttcgtcattaacccttgtatttgacatgttcaacacctctagcttcggaactacaaagt 7994189  T
Q  290 tcattccaattaggttcactgttgaacagtaggctaggttcaaat 334  Q
    ||||||| | ||| |||||| ||| ||| | ||||| ||||||||    
T  7994188 tcattcctagtagcttcactcttgtacaatcggctatgttcaaat 7994144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 109 - 334
Target Start/End: Original strand, 6426420 - 6426648
Alignment:
Q  109 ttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacatcgct--atttttcaa-taacaaatgcaaaagtcctcgac 205  Q
    ||||||| ||||||||||||||||||||||| ||| |||||||| ||||||  ||||||| |  |  | ||||||| ||| || |||||||  |  | ||    
T  6426420 ttgatctttcttagttgtgtgcagttttctaccacttgtttcacacccttcattgtgacacctttacaattttcaagtaataattgcaaaatccgacaac 6426519  T
Q  206 aattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggtt 305  Q
    ||||||||||| || ||||||  ||| |||| ||||   |||| | |||||| ||||||||||| |||| ||| |||  |||||||||||||  ||| ||    
T  6426520 aattctttgagatcgcataaaaagtttcatcatcaatgcttgtgtttgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagttt 6426619  T
Q  306 cactgttgaacagtaggctaggttcaaat 334  Q
    |||  |||||||| | |||| ||||||||    
T  6426620 cacgtttgaacagaaagctaagttcaaat 6426648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 271
Target Start/End: Original strand, 14818297 - 14818456
Alignment:
Q  115 tctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacatcgctat--ttttcaa-taacaaatgcaaaagtcctcgacaattct 211  Q
    ||||| || ||||||||||||||||  || |||||||| ||||||||||||||||   ||   ||||||| ||| ||  ||||||| ||   ||||||||    
T  14818297 tctctcagctgtgtgcagttttctactacatgtttcacacccttctctgtgacattattacaattttcaagtaataatcgcaaaagcccagaacaattct 14818396  T
Q  212 ttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctcta 271  Q
    | ||| ||| |||||||||| |||  ||||||||||||| ||| ||||||||||||||||    
T  14818397 tggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctcta 14818456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 10579828 - 10579754
Alignment:
Q  204 acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggg 278  Q
    ||||||||||||| ||  ||| ||||||  ||| ||||| |||||||||||||||||||||||||| ||||||||    
T  10579828 acaattctttgagatcgaatagagtgttttatcatcaacttttgtatatgacaagttcaacacctccagctgggg 10579754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 297
Target Start/End: Original strand, 6410013 - 6410106
Alignment:
Q  204 acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattcca 297  Q
    ||||||||||||| |||||||||| ||| |||| |||||  |||||| |||| ||||||||||||  |||| ||| |||  |||||||||||||    
T  6410013 acaattctttgagatcacataaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaagttcattcca 6410106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 334
Target Start/End: Original strand, 6415880 - 6416103
Alignment:
Q  114 ctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat---cgctatttttcaataacaaatgcaaaagtcctcgacaattc 210  Q
    ||||||||||||||||||||| |||| ||| ||||||||||||   ||||||||||   | | |  ||  | ||| |  |||||||| || | |||||||    
T  6415880 ctctcttagttgtgtgcagttctctaccacatgtttcactcccacttctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattc 6415979  T
Q  211 tttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactg 310  Q
    |||||| ||||||| || |||  ||| | ||||||||||| |||||||||||||||||| || | ||| |||  ||||| |||||||  ||| ||||||     
T  6415980 tttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagtccattccatgtagcttcactt 6416079  T
Q  311 ttgaacagtaggctaggttcaaat 334  Q
    ||  |||  |||||| ||||||||    
T  6416080 ttttacaaaaggctaagttcaaat 6416103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 9411348 - 9411432
Alignment:
Q  190 tgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagct 274  Q
    ||||||||||| ||||||||||||||| || |||| ||| || |||||  |||   |||||||||||||||||||||||| ||||    
T  9411348 tgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagct 9411432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 10579924 - 10579869
Alignment:
Q  112 atctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgac 167  Q
    |||||||| ||||||||||||||||||| ||| ||||| |||||||||| ||||||    
T  10579924 atctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgac 10579869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 334
Target Start/End: Complemental strand, 6589415 - 6589285
Alignment:
Q  204 acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattagg 303  Q
    |||||| |||||| ||| ||| ||||||  ||| | ||| ||||||| |||||||||||||||||| |||  ||| |||  |||||||||||||| |||     
T  6589415 acaattttttgagatcagatatagtgttttatcattaacatttgtatttgacaagttcaacacctccagcatgggaactacaaagttcattccaagtagc 6589316  T
Q  304 ttcactgttgaacagtaggctaggttcaaat 334  Q
    |||||| |   |||| |||||| ||||||||    
T  6589315 ttcactttcttacagaaggctaagttcaaat 6589285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 14802343 - 14802405
Alignment:
Q  204 acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacac 266  Q
    ||||||||||||  ||||||| |||||| |||| ||||||||||||| |||||| ||||||||    
T  14802343 acaattctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaaattcaacac 14802405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 6603389 - 6603332
Alignment:
Q  112 atctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat 169  Q
    |||| ||| |||||| |||||||||||| ||| ||||||||||| |||||||||||||    
T  6603389 atctttctcagttgtttgcagttttctaccacatgtttcactcctttctctgtgacat 6603332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 155
Target Start/End: Original strand, 28934884 - 28935004
Alignment:
Q  35 tctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagtt 134  Q
    ||||||||||||||| |||||  ||||| | |||| | || |   ||| |||||||||| ||||| | | ||| | ||||||||||||||||||||| ||    
T  28934884 tctttctcaatgatgaccttggtaatactagtgaggctaccaaattaggatgcactttaacacaatcatccaaatagatctctcttagttgtgtgcaatt 28934983  T
Q  135 ttctaacacgtgtttcactcc 155  Q
    ||||| ||| || ||||||||    
T  28934984 ttctaccacatgcttcactcc 28935004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 9411170 - 9411245
Alignment:
Q  15 aaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcact 90  Q
    |||||||||||| | | ||||||| |||||||| |||||||||||||||||   ||||||||   |||||||||||    
T  9411170 aaaaccaggtggagtttttatcttgctcaatgacggccttgaaaataccatatcgtcaacaatattagcatgcact 9411245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 6597020 - 6596946
Alignment:
Q  204 acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggg 278  Q
    ||||||||||||| |  | || |||||| |||| ||||| ||||||  |||||||||||||||||| ||||||||    
T  6597020 acaattctttgagatagcgtagagtgtttcatcatcaacatttgtacttgacaagttcaacacctccagctgggg 6596946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 6394776 - 6394833
Alignment:
Q  112 atctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat 169  Q
    |||||||| | ||||||||||||||||| ||| |||| ||| ||||| ||||||||||    
T  6394776 atctctctcaattgtgtgcagttttctaccacatgttccacacccttttctgtgacat 6394833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 317
Target Start/End: Complemental strand, 6594698 - 6594585
Alignment:
Q  204 acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattagg 303  Q
    ||||||||||||| |||||   |||||  |||| ||||||| ||||| |||||||| ||||||||| || | ||| |||  |||||| ||||||  |||     
T  6594698 acaattctttgagatcacacgtagtgtctcatcatcaacctctgtatttgacaagtacaacacctccagtttgggaactaaaaagtttattccatgtagc 6594599  T
Q  304 ttcactgttgaaca 317  Q
    |||||| |||||||    
T  6594598 ttcactcttgaaca 6594585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 6585415 - 6585367
Alignment:
Q  121 agttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat 169  Q
    |||||||||||  |||||| ||| ||||||| |||||||||||||||||    
T  6585415 agttgtgtgcaaatttctaccacatgtttcagtcccttctctgtgacat 6585367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 6589497 - 6589453
Alignment:
Q  125 gtgtgcagttttctaacacgtgtttcactcccttctctgtgacat 169  Q
    ||||||||||||||| ||| ||||||||||||| ||| |||||||    
T  6589497 gtgtgcagttttctaccacatgtttcactccctcctccgtgacat 6589453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 269
Target Start/End: Original strand, 27922336 - 27922580
Alignment:
Q  28 gctgttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtg 127  Q
    |||||||||| |||||| |||||||||||| ||||||| ||   |||||   ||||||| ||||||| |||||| | |||  | |||| ||| ||||| |    
T  27922336 gctgttatctgtctcaacgatggccttgaagataccatcgaagaaacaatattagcatgtactttatgacaaccatccaaactaatctttctcagttgag 27922435  T
Q  128 tgcagttttctaacacgtgtttcactcccttctctgtgacatcgct--atttttcaa-taacaaatgcaaaagtcctcgacaattctttgaggtcacata 224  Q
    |||||||||||| ||| || ||||||||||||| ||||| |||  |  | ||||||| | |||| | |||||| || | |||| |||||||| ||| |||    
T  27922436 tgcagttttctaccacatggttcactcccttctttgtgaaatcattacaattttcaagtgacaatttcaaaagcccacaacaactctttgagatcatata 27922535  T
Q  225 aagtgttccatcgtcaacctttgtatatgacaagttcaacacctc 269  Q
    ||||| | |||| ||||| ||||||||||||||||||||||||||    
T  27922536 aagtgcttcatcatcaacatttgtatatgacaagttcaacacctc 27922580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 269
Target Start/End: Original strand, 32151122 - 32151373
Alignment:
Q  21 aggtggcgctgttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctctt 120  Q
    |||||| || ||||||||||||||||||||||||||||||||||||   |||||||    ||||||||||| |||||||||  | || |||||||| ||     
T  32151122 aggtggagcagttatctttctcaatgatggccttgaaaataccattttatcaacaatatcagcatgcacttgatcacaaccccttaaattgatctccctc 32151221  T
Q  121 agttgtgtgcagttttctaacacgtgtttcactcccttctctgtgaca---tcgctatttttcaataacaaatgcaaaagtcctcgacaattctttgagg 217  Q
    |||||| | |||||||    ||| || ||||| |||||||||||||||   |  | |     ||||||||  |||||||| || | |||| ||||||||     
T  32151222 agttgtatacagtttttcctcacatgcttcacccccttctctgtgacatatttacaagacaccaataacagttgcaaaagcccactacaactctttgaga 32151321  T
Q  218 tcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctc 269  Q
    ||||||| |||||| |||| |||| | ||||| |||||||||| ||||||||    
T  32151322 tcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctc 32151373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 34 - 166
Target Start/End: Complemental strand, 5767920 - 5767788
Alignment:
Q  34 atctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagt 133  Q
    ||||||||||||||||||||||||| |||||| ||| |||||||| |||| ||||| |||  ||| || | ||| || |||||||| |||||||||||||    
T  5767920 atctttctcaatgatggccttgaaactaccatggaggcaacaactttagcttgcacattaggacagccatccaaatttatctctctgagttgtgtgcagt 5767821  T
Q  134 tttctaacacgtgtttcactcccttctctgtga 166  Q
    | | || ||||||  | |||||||| |||||||    
T  5767820 tgtttaccacgtgcatgactcccttgtctgtga 5767788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 297
Target Start/End: Complemental strand, 18315389 - 18315272
Alignment:
Q  180 caataacaaatgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctggggg 279  Q
    ||||||||  |||||||| |  |||||| |||||||| ||||||| |||| | |||| ||||| ||||||| |||||||||||||||||| || | |||     
T  18315389 caataacagttgcaaaagcctacgacaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttggga 18315290  T
Q  280 actctaaagttcattcca 297  Q
    ||| ||||||||||||||    
T  18315289 actttaaagttcattcca 18315272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 166
Target Start/End: Original strand, 14002887 - 14003019
Alignment:
Q  34 atctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagt 133  Q
    ||||||||||||||||||||||||| |||||| ||| |||||||| |||| ||||| |||  ||| || |||||  | |||||||| ||||| |||||||    
T  14002887 atctttctcaatgatggccttgaaactaccatggaggcaacaactttagcttgcacattaggacagccattcaaacttatctctctgagttgcgtgcagt 14002986  T
Q  134 tttctaacacgtgtttcactcccttctctgtga 166  Q
    | | || ||||||  | |||||||| |||||||    
T  14002987 tgtttaccacgtgcatgactcccttgtctgtga 14003019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 168
Target Start/End: Complemental strand, 17628301 - 17628145
Alignment:
Q  12 atgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttg 111  Q
    |||| |||||||||| ||  ||||||||||||||| |||||||| |||||||||   ||||||||   |||| | ||||| || ||||||  | ||  ||    
T  17628301 atgataaccaggtggggcaattatctttctcaatgttggccttgcaaataccatcatgtcaacaatattagctttcacttcataacaaccccttaaactg 17628202  T
Q  112 atctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgaca 168  Q
    ||||| || || |||||||||||||  ||||| || ||||||||||| |||||||||    
T  17628201 atctccctcagctgtgtgcagtttttcaacacatgcttcactcccttgtctgtgaca 17628145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 44736443 - 44736504
Alignment:
Q  108 gttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat 169  Q
    ||||||||||||||||||||| || |||||||  || |||||||||||||||  ||||||||    
T  44736443 gttgatctctcttagttgtgtacaattttctacaacatgtttcactcccttcgttgtgacat 44736504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 32 - 269
Target Start/End: Complemental strand, 45245352 - 45245112
Alignment:
Q  32 ttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgca 131  Q
    |||||||| |||| |||||||||||||||||||| ||| ||| |||  |||||||||||| |   ||     |||| ||||||||| | |||||||||||    
T  45245352 ttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgca 45245253  T
Q  132 gttttctaacacgtgtttcactcccttctctgtgacatcgcta----tttttcaataacaaatgcaaaagtcctcgacaattctttgaggtcacataaag 227  Q
     ||||||| ||| |||||||||||||| |||||||||| | ||    ||||||||||| |  |||||||| || |||||| |||||||| ||||||  ||    
T  45245252 attttctaccacatgtttcactcccttatctgtgacat-gataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatggag 45245154  T
Q  228 tgttccatcgtcaacctttgtatatgacaagttcaacacctc 269  Q
    |||| |||| |||||| |||| | |||||| |||||||||||    
T  45245153 tgtttcatcatcaaccattgtctctgacaaattcaacacctc 45245112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 334
Target Start/End: Complemental strand, 1037848 - 1037626
Alignment:
Q  115 tctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgac---atcgctatttttcaataacaaatgcaaaagtcctcgacaattct 211  Q
    ||||| ||||||||||||||||| |  || |||||||| || |||||||||||   ||| | ||||| ||  ||||  || ||||| || | ||||||||    
T  1037848 tctctgagttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattct 1037749  T
Q  212 ttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgt 311  Q
    ||||| ||| ||| |||||| |||| |||||   ||||| ||||||||| ||||||||||  |  || ||| ||||||| |||| || ||| |||||| |    
T  1037748 ttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactct 1037649  T
Q  312 tgaacagtaggctaggttcaaat 334  Q
    |||| |||||||||  |||||||    
T  1037648 tgaatagtaggctaaattcaaat 1037626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 295
Target Start/End: Complemental strand, 32785856 - 32785773
Alignment:
Q  212 ttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattc 295  Q
    ||||| |||||||||||| | |||| ||||   |||||| ||||||||||||||||||||| | |||  || ||||||||||||    
T  32785856 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttcattc 32785773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 32 - 317
Target Start/End: Complemental strand, 41889828 - 41889533
Alignment:
Q  32 ttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgca 131  Q
    ||||||||||||||||  |||||||| ||||||||||| | |||||  || |||  ||||||| |||||| | |||  |||||  ||| ||||| |||||    
T  41889828 ttatctttctcaatgacagccttgaagataccattgaggccacaacattaccatttactttatgacaaccatccaaactgatcattctcagttgcgtgca 41889729  T
Q  132 gttttctaa-------cacgtgtttcactcccttctctgtgacatcg---ctatttttcaataacaaatgcaaaagtcctcgacaattctttgaggtcac 221  Q
    ||| |||||       ||| || ||||||||||||| |||||||||    | |||||| | |||||| | | |||| || | |||| |||||||| ||      
T  41889728 gttctctaatctctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagatctt 41889629  T
Q  222 ataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaaca 317  Q
    |||||||||| |||| ||||| ||||||||||| |||||||||||||| |  | ||| ||| ||||||||||| ||| ||| |||||| |||||||    
T  41889628 ataaagtgtttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttcactattgaaca 41889533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 278
Target Start/End: Complemental strand, 20478267 - 20478100
Alignment:
Q  114 ctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat---cgctatttttcaataacaaatgcaaaagtcctcgacaattc 210  Q
    |||||| |||||||||||||||||||  || |||||| |||| |||  ||||||||   ||| |||||||| ||  |  |||||||| || | |||||||    
T  20478267 ctctctcagttgtgtgcagttttctacgacatgtttcgctcctttcattgtgacattatcgcaatttttcagtagtatttgcaaaagcccacaacaattc 20478168  T
Q  211 tttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggg 278  Q
     ||||| ||||| | | |||| | || ||||| |||||||||||||||||||||||||| ||||||||    
T  20478167 cttgagatcacagataatgtttcgtcatcaacatttgtatatgacaagttcaacacctccagctgggg 20478100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 269
Target Start/End: Complemental strand, 41901795 - 41901562
Alignment:
Q  39 tctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttct 138  Q
    |||||| || || ||||||||||||||  |   ||||||  ||||||| ||||||  |||||| |||||  | |||| ||| | ||| || |||||||||    
T  41901795 tctcaacgacggtcttgaaaataccatcaaagaaacaacattagcatgtactttaaaacaaccattcaaactaatctttctcaattgcgtacagttttct 41901696  T
Q  139 aacacgtgtttcactcccttctctgtgacatcgcta---tttttcaataacaaatgcaaaagtcctcgacaattctttgaggtcacataaagtgttccat 235  Q
    | ||| || ||||||||||||| |||||||||  ||   | ||  | | |||| | ||||||||| | |||| |||||||| ||| |||||||| | |||    
T  41901695 accacatgcttcactcccttctttgtgacatcattacaatcttgaagtgacaatttcaaaagtccacaacaactctttgagatcatataaagtgcttcat 41901596  T
Q  236 cgtcaacctttgtatatgacaagttcaacacctc 269  Q
    | ||||| ||||||||||||||||||||||||||    
T  41901595 catcaacttttgtatatgacaagttcaacacctc 41901562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 334
Target Start/End: Complemental strand, 1559 - 1426
Alignment:
Q  204 acaattctttgaggtcacataaagtgttccatcgtca---acctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaatt 300  Q
    ||||||||||||| ||||||| |||||| |||| |||   || ||||||| |||||||| ||||||||||||||  || |||  |||||||||| ||| |    
T  1559 acaattctttgagatcacatagagtgtttcatcatcatcaacatttgtatttgacaagtccaacacctctagcttaggaactacaaagttcatttcaaat 1460  T
Q  301 aggttcactgttgaacagtaggctaggttcaaat 334  Q
    |||| ||| | ||||||  |||||| ||||||||    
T  1459 aggtccacagatgaacaccaggctaagttcaaat 1426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 269
Target Start/End: Original strand, 39177 - 39256
Alignment:
Q  190 tgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctc 269  Q
    |||||||| || | |||| |||||||| |||||||||||||| |||| | |||||||||| ||| |||||||||||||||    
T  39177 tgcaaaagcccactacaactctttgagatcacataaagtgtttcatcattaacctttgtaaatgtcaagttcaacacctc 39256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 121 - 334
Target Start/End: Complemental strand, 802 - 586
Alignment:
Q  121 agttgtgtgcagttttctaacacgtgtttcactcccttctctgtgac---atcgctatttttcaataacaaatgcaaaagtcctcgacaattctttgagg 217  Q
    |||||||||||||||||||  || |||||||| || |||||| ||||   ||| | ||||| || |||||  || || || || | ||||||||| |||     
T  802 agttgtgtgcagttttctactacatgtttcacaccattctctatgacttcatcacaattttccagtaacagttgtaatagcccacaacaattcttcgaga 703  T
Q  218 tcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaaca 317  Q
    ||| ||| |||||| |||| || ||  |||||| ||||||||| ||||||||||  |  || ||| ||||||| |||| || ||| |||||| |||||||    
T  702 tcatatagagtgtttcatcatcgacacttgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaaca 603  T
Q  318 gtaggctaggttcaaat 334  Q
    ||||||||  |||||||    
T  602 gtaggctaaattcaaat 586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 297
Target Start/End: Complemental strand, 15092257 - 15092150
Alignment:
Q  190 tgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagt 289  Q
    |||||||| || | ||||||||||||| || |||| ||||||  ||| | ||||||||| | |||||| ||||||||||| |||| ||| |||  |||||    
T  15092257 tgcaaaagcccacaacaattctttgagatcgcatagagtgttttatcattaacctttgtttctgacaaattcaacacctccagctcgggaactgcaaagt 15092158  T
Q  290 tcattcca 297  Q
    ||||||||    
T  15092157 tcattcca 15092150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 334
Target Start/End: Original strand, 10614586 - 10614730
Alignment:
Q  190 tgcaaaagtcctcgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagctgggggactctaaagt 289  Q
    |||||||| || | ||| ||||| ||| ||||||| ||||||  ||| | |||||| |||| |||||||||||||||||| || | ||| ||   || ||    
T  10614586 tgcaaaagcccactacagttcttcgagatcacatagagtgttttatcattaaccttcgtatttgacaagttcaacacctccagattgggaacaacaacgt 10614685  T
Q  290 tcattccaattaggttcactgttgaacagtaggctaggttcaaat 334  Q
    ||||||||| ||| |||||| ||  ||| ||||||| ||||||||    
T  10614686 tcattccaagtagcttcacttttttacaataggctaagttcaaat 10614730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 10170259 - 10170210
Alignment:
Q  121 agttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacatc 170  Q
    ||||||| ||||||||||  ||| ||||||||||| ||||||||||||||    
T  10170259 agttgtgagcagttttctttcacatgtttcactcctttctctgtgacatc 10170210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 10177784 - 10177735
Alignment:
Q  121 agttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacatc 170  Q
    ||||||| ||||||||||  ||| ||||||||||| ||||||||||||||    
T  10177784 agttgtgagcagttttctttcacatgtttcactcctttctctgtgacatc 10177735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 15092338 - 15092294
Alignment:
Q  112 atctctcttagttgtgtgcagttttctaacacgtgtttcactccc 156  Q
    |||||||| | ||||||||||||||||| ||| ||||||||||||    
T  15092338 atctctctcaattgtgtgcagttttctagcacatgtttcactccc 15092294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University