View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3062_high_16 (Length: 318)
Name: NF3062_high_16
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 55162227 - 55162528
Alignment:
| Q |
1 |
aaaagaaagcgtgccgtcaccgttcatgtatcagaccctaatggaaagaaattacaaggagcttctgtgtttgtagagcaaatatcaaaagactttccta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55162227 |
aaaagaaagcgtgccgtcaccgttcatgtatcagaccctaatggaaggaaattacaaggagcttctgtgtttgtagagcaaatatcaaaagactttccta |
55162326 |
T |
|
| Q |
101 |
ttggctctgcgatatcaaagaccattcttggcaacataccatatcagaattggtttttgaaacggttcaatgctgcagtgtttgaaaacgagcttaaatg |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55162327 |
ttggctctgcgatagcaaagaccattcttggcaacataccatatcagaattggtttttgaaacggttcaatgctgcagtgtttgaaaacgagcttaaatg |
55162426 |
T |
|
| Q |
201 |
gtatgccacagagcctcatgaaggcagagtcaactacacaatttcagatcaaatgatgcaatttgttagagccaacaaaatcatagctagagggcacaat |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55162427 |
gtatgccacagagcctcatgaaggcagcgtcaactacacaatttcagaccaaatgatgcaatttgttagagccaacaaaatcatagctagagggcacaat |
55162526 |
T |
|
| Q |
301 |
at |
302 |
Q |
| |
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|| |
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| T |
55162527 |
at |
55162528 |
T |
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