View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3062_high_2 (Length: 645)
Name: NF3062_high_2
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 13 - 627
Target Start/End: Complemental strand, 42272414 - 42271801
Alignment:
| Q |
13 |
aatatagggtataaagatggatcatcactattttaagtgaaattttgtatgctgctaacaaaacaaattaacaaataaaatttgtctataaaagaagaag |
112 |
Q |
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| T |
42272414 |
aatataggatataaagatggatcatcactattttaagtgaaattt-gtatgctgctaacaaaacaaattaacaaataaaatttgtctataaaagaagaag |
42272316 |
T |
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| Q |
113 |
aaaaaactcacatgtgatggtgtttgaagcccttgtttctttgactcagataagtttgagtatctcatattaggcctttgtggatggattccaacaactg |
212 |
Q |
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| T |
42272315 |
aaaaaactcacatgtgatggtgtttgaagcccttgtttctttgactcagataagtttgagtatctcatattaggcctttgtggatggattccaacaactg |
42272216 |
T |
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| Q |
213 |
gccttccaagcctactattaaaggatataacatctgagaaatttttggtgcatggtgaaatatttggcaacccttcataaaatttgccattgtgatctcc |
312 |
Q |
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| T |
42272215 |
gccttccaagcctactattaaaggatataacatctgagaaatttttggtgcatggtgaaatatttggcaacccttcataaaatttgccattgtgatctcc |
42272116 |
T |
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| Q |
313 |
cactgagttaaatccatcaaggaatccatttggattaagtgattttctaaatacatgtccttgcatcacttcacttgcatgatgatgatattcttcctta |
412 |
Q |
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| T |
42272115 |
cactgagttaaatccatcaagatatccatttggattaagtgattttctaaatacatgtccttgcatcacttcacttgcatgatgatgatattcttcctta |
42272016 |
T |
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| Q |
413 |
accttattcatgtcttgaatatcaaggcaactagggaacattttattacctactccttctctaatagtacatgatgtggaatcaccaaaaggtagtttga |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42272015 |
accttattcatgtcttgaatatcaaggcaactagggaacattttattacctactccttctctaatagtacatgatgtggaatcaccaaaaggtagtttga |
42271916 |
T |
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| Q |
513 |
aatgacaattagggtcagaatcatgtgtgtagtgattatgatccatattggatgaattagaattattcaaattagtagacaaattgttatttgtttgtga |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42271915 |
aatgacaattagggtcagaatcatgtgtgtagtgattatgatccatattggacgaattagaattattcaaattagtagacaaattgttatttgtttgtga |
42271816 |
T |
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| Q |
613 |
atcaaagtggctact |
627 |
Q |
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| T |
42271815 |
atcaaagtggctact |
42271801 |
T |
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