View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3062_high_27 (Length: 254)

Name: NF3062_high_27
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3062_high_27
NF3062_high_27
[»] chr7 (8 HSPs)
chr7 (1-109)||(8230375-8230483)
chr7 (2-109)||(45277552-45277659)
chr7 (1-102)||(21715437-21715538)
chr7 (1-109)||(40029625-40029736)
chr7 (1-109)||(4675382-4675490)
chr7 (1-109)||(31392423-31392531)
chr7 (1-78)||(32881479-32881556)
chr7 (3-50)||(3704640-3704687)
[»] chr4 (13 HSPs)
chr4 (1-109)||(19994839-19994947)
chr4 (1-108)||(44252779-44252886)
chr4 (3-109)||(55947720-55947823)
chr4 (3-96)||(39654416-39654510)
chr4 (3-57)||(7500825-7500879)
chr4 (2-57)||(5731717-5731772)
chr4 (3-57)||(7499594-7499648)
chr4 (6-57)||(7492796-7492847)
chr4 (3-57)||(7491547-7491602)
chr4 (11-57)||(27492880-27492925)
chr4 (19-57)||(27493968-27494006)
chr4 (1-57)||(24039619-24039674)
chr4 (1-57)||(36139643-36139699)
[»] chr3 (3 HSPs)
chr3 (1-109)||(33733299-33733407)
chr3 (3-109)||(53529147-53529250)
chr3 (2-57)||(18655487-18655542)
[»] chr2 (8 HSPs)
chr2 (3-109)||(1840535-1840641)
chr2 (1-57)||(18159677-18159733)
chr2 (1-57)||(18160593-18160649)
chr2 (1-57)||(18308652-18308708)
chr2 (1-32)||(13948088-13948119)
chr2 (1-32)||(14089295-14089326)
chr2 (10-57)||(18308440-18308487)
chr2 (11-52)||(15348196-15348237)
[»] chr5 (8 HSPs)
chr5 (1-109)||(1418581-1418690)
chr5 (2-109)||(25915867-25915974)
chr5 (1-74)||(30332633-30332706)
chr5 (1-74)||(30332808-30332881)
chr5 (2-57)||(37498659-37498714)
chr5 (3-57)||(13163662-13163715)
chr5 (3-47)||(933696-933740)
chr5 (9-57)||(16182346-16182394)
[»] chr1 (11 HSPs)
chr1 (3-109)||(28919435-28919541)
chr1 (16-109)||(33259006-33259099)
chr1 (16-109)||(33279165-33279258)
chr1 (3-109)||(7654047-7654150)
chr1 (3-109)||(36145705-36145808)
chr1 (1-108)||(19057454-19057561)
chr1 (3-74)||(16672877-16672948)
chr1 (1-104)||(24085759-24085863)
chr1 (1-57)||(33485098-33485154)
chr1 (11-46)||(31321234-31321269)
chr1 (11-40)||(3893899-3893928)
[»] scaffold0489 (1 HSPs)
scaffold0489 (1-109)||(5670-5780)
[»] chr8 (4 HSPs)
chr8 (1-102)||(25265498-25265599)
chr8 (28-109)||(33294256-33294337)
chr8 (3-55)||(17097225-17097277)
chr8 (11-57)||(31819276-31819322)
[»] chr6 (1 HSPs)
chr6 (1-74)||(19082973-19083046)


Alignment Details
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 8230375 - 8230483
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttcttcattact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8230375 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatcttcttcccacatcttcttcttcattact 8230474  T
Q  101 atcattgtc 109  Q
    |||||||||    
T  8230475 atcattgtc 8230483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 45277659 - 45277552
Alignment:
Q  2 gaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttcttcattacta 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45277659 gaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcatcatctttttcccacatcttcttcttcattacta 45277560  T
Q  102 tcattgtc 109  Q
    ||||||||    
T  45277559 tcattgtc 45277552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 21715437 - 21715538
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttcttcattact 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21715437 cgaaatttgtagagggaccaaaaccaaaaaacgaggagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttctttattact 21715536  T
Q  101 at 102  Q
    ||    
T  21715537 at 21715538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 40029736 - 40029625
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttctt---cttcatt 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||   |||||||    
T  40029736 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatcttcttcccacatcttcttcttcttcatt 40029637  T
Q  98 actatcattgtc 109  Q
    ||||||||||||    
T  40029636 actatcattgtc 40029625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 4675490 - 4675382
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttcttcattact 100  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||    
T  4675490 cgaaatttgtagagggagcaaaactaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatcttcttcccacattttcttcttcactact 4675391  T
Q  101 atcattgtc 109  Q
    |||||||||    
T  4675390 atcattgtc 4675382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 31392423 - 31392531
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttcttcattact 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||| ||    
T  31392423 cgaaatttgtaaagggaccaaaaccaaaaaacgagaagacgaaaaattcaaattttattacatttcttcatcttcttcccacattttcttcttcattgct 31392522  T
Q  101 atcattgtc 109  Q
    |||||||||    
T  31392523 atcattgtc 31392531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 32881479 - 32881556
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctttttc 78  Q
    |||||||| | ||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  32881479 cgaaatttatcgagggaccaaagccaaaaaacgagaagacaaaaaattcaaatttaattatatttcttcatctttttc 32881556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 3704640 - 3704687
Alignment:
Q  3 aaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattca 50  Q
    ||||| ||||||||||||||||||||||| |||||||| |||||||||    
T  3704640 aaattcgtagagggaccaaaaccaaaaaatgagaagacaaaaaattca 3704687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 19994839 - 19994947
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttcttcattact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19994839 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatcttcttcccacatcttcttcttcattact 19994938  T
Q  101 atcattgtc 109  Q
    |||||||||    
T  19994939 atcattgtc 19994947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 44252886 - 44252779
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttcttcattact 100  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  44252886 cgaaatttgtaaaggggccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatcttcttcccacattttcttcttcattact 44252787  T
Q  101 atcattgt 108  Q
    ||||||||    
T  44252786 atcattgt 44252779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 55947720 - 55947823
Alignment:
Q  3 aaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttcttcattactat 102  Q
    ||||||||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  55947720 aaatttgtagagggaccaaaaccaaaaaac---aagacaaaaaattcaaatttaattacatttcttcatcttcttcccacattttcttcttcattactat 55947816  T
Q  103 cattgtc 109  Q
    |||||||    
T  55947817 cattgtc 55947823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 39654510 - 39654416
Alignment:
Q  3 aaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaattta-attacatttcttcatctttttcccacatcttcttcttcat 96  Q
    ||||||||||||||||||||||||||||| |||||||| |||| || |||||||  ||||||||||||||||| ||| ||  |||||||||||||    
T  39654510 aaatttgtagagggaccaaaaccaaaaaaagagaagacaaaaattttaaatttagtttacatttcttcatcttattctcatgtcttcttcttcat 39654416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 7500879 - 7500825
Alignment:
Q  3 aaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaa 57  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  7500879 aaatttgtagagggaccaaaacaaaaaaacgagaagtcgaaaaattcaaatttaa 7500825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 5731717 - 5731772
Alignment:
Q  2 gaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaa 57  Q
    |||||||||||||||||||||||||||||||||||||  |||||||| ||||||||    
T  5731717 gaaatttgtagagggaccaaaaccaaaaaacgagaagtagaaaaatttaaatttaa 5731772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 7499594 - 7499648
Alignment:
Q  3 aaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaa 57  Q
    ||||||||||||||| |||||||||||||||||||  ||||||||||||||||||    
T  7499594 aaatttgtagagggatcaaaaccaaaaaacgagaaatcgaaaaattcaaatttaa 7499648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 7492847 - 7492796
Alignment:
Q  6 tttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaa 57  Q
    ||||||||||||||||||| |||||| |||||| ||||||||||||||||||    
T  7492847 tttgtagagggaccaaaacaaaaaaatgagaagtcgaaaaattcaaatttaa 7492796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 7491547 - 7491602
Alignment:
Q  3 aaatttgtagagggaccaaaaccaaaaaacgagaaga-cgaaaaattcaaatttaa 57  Q
    |||||||| |||||| |||||||||||||||| || | ||||||||||||||||||    
T  7491547 aaatttgttgagggatcaaaaccaaaaaacgaaaaaatcgaaaaattcaaatttaa 7491602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 27492880 - 27492925
Alignment:
Q  11 agagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaa 57  Q
    ||||||| |||||||||||||||||||| || |||||||||||||||    
T  27492880 agagggatcaaaaccaaaaaacgagaagtcg-aaaattcaaatttaa 27492925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 27494006 - 27493968
Alignment:
Q  19 caaaaccaaaaaacgagaagacgaaaaattcaaatttaa 57  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  27494006 caaaaccaaaaaacaagaagtcgaaaaattcaaatttaa 27493968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 24039674 - 24039619
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaa 57  Q
    ||||||| ||||| |||||||||||||||||||| ||| || |||| ||||||||||    
T  24039674 cgaaattcgtagaaggaccaaaaccaaaaaacgataagtcggaaaa-tcaaatttaa 24039619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 36139699 - 36139643
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaa 57  Q
    |||||||  ||||||||||||||||  ||||||| ||| | ||||||||||||||||    
T  36139699 cgaaattcttagagggaccaaaaccggaaaacgaaaagtcaaaaaattcaaatttaa 36139643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 33733299 - 33733407
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttcttcattact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33733299 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatcttcttcccacatcttcttcttcattact 33733398  T
Q  101 atcattgtc 109  Q
    |||||||||    
T  33733399 atcattgtc 33733407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 53529250 - 53529147
Alignment:
Q  3 aaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttcttcattactat 102  Q
    |||||||||||||||| |||||||||||||   ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  53529250 aaatttgtagagggacaaaaaccaaaaaac---aagacgaaaaattcaaatttaattacatttcttcatcttcttcccacattttcttcttcattactat 53529154  T
Q  103 cattgtc 109  Q
    |||||||    
T  53529153 cattgtc 53529147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 18655487 - 18655542
Alignment:
Q  2 gaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaa 57  Q
    |||||||||||||||||||||||||||||||||||||  |||||||| ||||||||    
T  18655487 gaaatttgtagagggaccaaaaccaaaaaacgagaagtagaaaaatttaaatttaa 18655542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 6e-49; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 1840535 - 1840641
Alignment:
Q  3 aaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttcttcattactat 102  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1840535 aaatttgtagagggaccaaaacaaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatcttcttcccacatcttcttcttcattactat 1840634  T
Q  103 cattgtc 109  Q
    |||||||    
T  1840635 cattgtc 1840641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 18159677 - 18159733
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaa 57  Q
    ||||||| ||||||||||||||| ||||||||||||||  |||||||||||||||||    
T  18159677 cgaaattcgtagagggaccaaaatcaaaaaacgagaagttgaaaaattcaaatttaa 18159733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 18160593 - 18160649
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaa 57  Q
    ||||||| ||||||||||||||| ||||||||||||||  |||||||||||||||||    
T  18160593 cgaaattcgtagagggaccaaaatcaaaaaacgagaagttgaaaaattcaaatttaa 18160649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 18308708 - 18308652
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaa 57  Q
    ||||||| ||||||||||||||| ||||||||||||||  ||||| |||||||||||    
T  18308708 cgaaattcgtagagggaccaaaatcaaaaaacgagaagttgaaaatttcaaatttaa 18308652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 13948088 - 13948119
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaac 32  Q
    ||||||||||||||||||||||||||||||||    
T  13948088 cgaaatttgtagagggaccaaaaccaaaaaac 13948119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 14089295 - 14089326
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaac 32  Q
    ||||||||||||||||||||||||||||||||    
T  14089295 cgaaatttgtagagggaccaaaaccaaaaaac 14089326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 18308440 - 18308487
Alignment:
Q  10 tagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaa 57  Q
    |||||||| |||||||||||||||||||  |||||||||| |||||||    
T  18308440 tagagggatcaaaaccaaaaaacgagaattcgaaaaattcgaatttaa 18308487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 15348237 - 15348196
Alignment:
Q  11 agagggaccaaaaccaaaaaacgagaagacgaaaaattcaaa 52  Q
    |||||||||||||||| ||||||||||||| |||||| ||||    
T  15348237 agagggaccaaaaccataaaacgagaagacaaaaaatccaaa 15348196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 1418690 - 1418581
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaa-cgagaagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttcttcattac 99  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1418690 cgaaatttgtagagggaccaaaaccaaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatcttcttcccacatcttcttcttcattac 1418591  T
Q  100 tatcattgtc 109  Q
    ||||||||||    
T  1418590 tatcattgtc 1418581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 25915974 - 25915867
Alignment:
Q  2 gaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttcttcattacta 101  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  25915974 gaaatttgtagagggaccaaaaccaaaaaacgagaaaatgaaaaattcaaatttaattacatttcttcatcttcttcccacattttcttcttcattacta 25915875  T
Q  102 tcattgtc 109  Q
    ||||||||    
T  25915874 tcattgtc 25915867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 30332633 - 30332706
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctt 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30332633 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctt 30332706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 30332808 - 30332881
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctt 74  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30332808 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacaaaaaattcaaatttaattacatttcttcatctt 30332881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 37498714 - 37498659
Alignment:
Q  2 gaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaa 57  Q
    |||||||  ||||||||||||||||||||| |||||||| ||||||||||||||||    
T  37498714 gaaattttaagagggaccaaaaccaaaaaatgagaagacaaaaaattcaaatttaa 37498659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 13163715 - 13163662
Alignment:
Q  3 aaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaa 57  Q
    |||||||| ||||||||| ||| ||||||| ||||||| ||||||||||||||||    
T  13163715 aaatttgttgagggaccagaac-aaaaaacaagaagacaaaaaattcaaatttaa 13163662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 933696 - 933740
Alignment:
Q  3 aaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaat 47  Q
    |||||||||||||| | ||||| ||||||||||||||| ||||||    
T  933696 aaatttgtagagggtcaaaaactaaaaaacgagaagacaaaaaat 933740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 16182394 - 16182346
Alignment:
Q  9 gtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaa 57  Q
    |||||||||||||||| |||||| || ||| | ||||||||||||||||    
T  16182394 gtagagggaccaaaacaaaaaaatgaaaagtcaaaaaattcaaatttaa 16182346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 28919435 - 28919541
Alignment:
Q  3 aaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttcttcattactat 102  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  28919435 aaatttgtagagggaccaaaaccaaaaaacgagaagatgaaaaatttaaatttaattacatttcttcatcttcttccgacatcttcttcttcattactat 28919534  T
Q  103 cattgtc 109  Q
    |||||||    
T  28919535 cattgtc 28919541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 33259099 - 33259006
Alignment:
Q  16 gaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttcttcattactatcattgtc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33259099 gaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattatatttcttcatctttttcccacatcttcttcttcattactatcattgtc 33259006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 33279258 - 33279165
Alignment:
Q  16 gaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttcttcattactatcattgtc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33279258 gaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattatatttcttcatctttttcccacatcttcttcttcattactatcattgtc 33279165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 7654047 - 7654150
Alignment:
Q  3 aaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttcttcattactat 102  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  7654047 aaatttgtagagggaccaaaaccaaaaaac---aagacgaaaaattcaaatttaattacatttcttcatcttcttcccacattttcttcttcattactat 7654143  T
Q  103 cattgtc 109  Q
    |||||||    
T  7654144 cattgtc 7654150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 36145705 - 36145808
Alignment:
Q  3 aaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttcttcattactat 102  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  36145705 aaatttgtagagggaccaaaaccaaaaaac---aagacgaaaaattcaaatttaattacatttcttcatcttcttcccacattttcttcttcattactat 36145801  T
Q  103 cattgtc 109  Q
    |||||||    
T  36145802 cattgtc 36145808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 19057561 - 19057454
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttcttcattact 100  Q
    ||||||||||| |||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  19057561 cgaaatttgtatagggtccaaaaccaaaaaacgagaatatgaaaaattcaaatttaattacatttcttcatcttcttcccacattttcttcttcattact 19057462  T
Q  101 atcattgt 108  Q
    ||||||||    
T  19057461 atcattgt 19057454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 16672948 - 16672877
Alignment:
Q  3 aaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctt 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16672948 aaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctt 16672877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 24085759 - 24085863
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaatt-acatttcttcatctttttcccacatcttcttcttcattac 99  Q
    |||||||| ||||||  ||||||||||||||| |||||| |||||||||||||||| || ||||||||||||||| ||||||||||||||||||||| ||    
T  24085759 cgaaatttctagaggatccaaaaccaaaaaacaagaagaggaaaaattcaaatttagtttacatttcttcatcttcttcccacatcttcttcttcatcac 24085858  T
Q  100 tatca 104  Q
    |||||    
T  24085859 tatca 24085863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 33485154 - 33485098
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaa 57  Q
    ||||||| ||||||| ||||||||||||||||||||||  | ||||| |||||||||    
T  33485154 cgaaattcgtagaggaaccaaaaccaaaaaacgagaagttgtaaaatccaaatttaa 33485098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 31321234 - 31321269
Alignment:
Q  11 agagggaccaaaaccaaaaaacgagaagacgaaaaa 46  Q
    |||||||||||||||||||||||||||||| |||||    
T  31321234 agagggaccaaaaccaaaaaacgagaagactaaaaa 31321269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 40
Target Start/End: Complemental strand, 3893928 - 3893899
Alignment:
Q  11 agagggaccaaaaccaaaaaacgagaagac 40  Q
    ||||||||||||||||||||||||||||||    
T  3893928 agagggaccaaaaccaaaaaacgagaagac 3893899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0489 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 5670 - 5780
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaacga-gaagacgaaaaatt-caaatttaattacatttcttcatctttttcccacatcttcttcttcatta 98  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5670 cgaaatttgtagaaggaccaaaaccaaaaaacgaagaagacgaaaaattacaaatttaattacatttcttcatcttcttcccacatcttcttcttcatta 5769  T
Q  99 ctatcattgtc 109  Q
    |||||||||||    
T  5770 ctatcattgtc 5780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 25265599 - 25265498
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttcttcattact 100  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  25265599 cgaaatttgtagagggaccaaaaccaaaaaacgaggagaccaaaaattcaaatttaattacatttcttcatcttttttccacatcttcttctttattact 25265500  T
Q  101 at 102  Q
    ||    
T  25265499 at 25265498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 33294256 - 33294337
Alignment:
Q  28 aaaacgagaagacgaaaaattcaaatttaattacatttcttcatctttttcccacatcttcttcttcattactatcattgtc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33294256 aaaacgagaagacgaaaaattcaaatttaattacatttcttcatcttcttcccacatcttcttcttcattactatcattgtc 33294337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 17097225 - 17097277
Alignment:
Q  3 aaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaattt 55  Q
    ||||| |||||||||||||||| |||||| |||||| ||||||||||||||||    
T  17097225 aaattcgtagagggaccaaaacaaaaaaatgagaagtcgaaaaattcaaattt 17097277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 31819276 - 31819322
Alignment:
Q  11 agagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaa 57  Q
    ||||||||| |||||||||||| ||||||| ||||||||||||||||    
T  31819276 agagggaccgaaaccaaaaaactagaagacaaaaaattcaaatttaa 31819322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 19082973 - 19083046
Alignment:
Q  1 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctt 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19082973 cgaaatttgtagagggaccaaaaccaaaaaacgagaagacgaaaaattcaaatttaattacatttcttcatctt 19083046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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