View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3062_high_30 (Length: 249)
Name: NF3062_high_30
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_high_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 47039607 - 47039826
Alignment:
| Q |
18 |
gccatttgtttctgatacacaaaatctatcaccttgttttgtatggtggaacaataagaacgatattacagctatgcccatcattttgtgacatcattat |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47039607 |
gccatttgttt-tgatacacaaaatctatcaccttgttttgtgtggtggaacaataagaacgatattacagctatgcccatcattttgtgacatcattat |
47039705 |
T |
|
| Q |
118 |
aacatgtctaagggcattaaagtaataaaagtgtgaatattaaataaccacgggattcattatgggtcttatctttttcacaacttcatcacattgaaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47039706 |
aacatgtctaagggcattaaagtaataaaagtgtgaatattaaataaccacgggattcattatgggtcttatctttttcacaacttcatcacattgaaac |
47039805 |
T |
|
| Q |
218 |
cgataacagttcactccttca |
238 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
47039806 |
cgataacagttcactccttca |
47039826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University