View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3062_high_31 (Length: 247)
Name: NF3062_high_31
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 16699511 - 16699279
Alignment:
| Q |
1 |
attgcaatatcttggttacccttcatgcaggacatattctctcttttgattttattttgtaattaccaattttgtagagactggtgagcctcgcatggtt |
100 |
Q |
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| T |
16699511 |
attgcaatatcttggttac-----atgcaggacatattctctcttttgattttattttgtaattaccaattttatagagacttgcaagcctcgcatggtt |
16699417 |
T |
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| Q |
101 |
cttggattcaatactttggattgacatcatacttcatggaatcatggcatctgcaattcgtagcctgagttcaattccttcttcttgtctatccctgcgg |
200 |
Q |
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| T |
16699416 |
cttggattcaatactttggattgacatcatacttcatggaatcatggcatctgcaattcgtagcctgagttcaattccttcttcttgtctatccctgcgg |
16699317 |
T |
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| Q |
201 |
tccccttccacaatgttatactacacgttgtctatctc |
238 |
Q |
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| T |
16699316 |
tccccttccacaatgttatactacacattgtctatctc |
16699279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 17673747 - 17673515
Alignment:
| Q |
1 |
attgcaatatcttggttacccttcatgcaggacatattctctcttttgattttattttgtaattaccaattttgtagagactggtgagcctcgcatggtt |
100 |
Q |
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| T |
17673747 |
attgcaatatcttggttac-----atgcaggacatattctctcttttgattttattttgtaattaccaattttatagagacttgcaagcctcgcatggtt |
17673653 |
T |
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| Q |
101 |
cttggattcaatactttggattgacatcatacttcatggaatcatggcatctgcaattcgtagcctgagttcaattccttcttcttgtctatccctgcgg |
200 |
Q |
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| T |
17673652 |
cttggattcaatactttggattgacatcatacttcatggaatcatggcatctgcaattcgtagcctgagttcaattccttcttcttgtctatccctgcgg |
17673553 |
T |
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| Q |
201 |
tccccttccacaatgttatactacacgttgtctatctc |
238 |
Q |
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| T |
17673552 |
tccccttccacaatgttatactacacattgtctatctc |
17673515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 13716218 - 13715978
Alignment:
| Q |
1 |
attgcaatatcttggttacccttcatgcaggacatattctctcttttgatttta---ttttgtaattaccaattttgtagagactggt---------gag |
88 |
Q |
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| T |
13716218 |
attgcaatatctagattacccttcatgcagggcatattctctcttttgtttttaatatttttttattatca-ttttgtagagactggctatgggtgagag |
13716120 |
T |
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| Q |
89 |
cctcgcatggttcttggattcaatactttggattgacatcatacttcatggaatcatggcatctgcaattcgtagcctgagttcaattccttcttcttgt |
188 |
Q |
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|||| ||||| ||||||||||| ||||| | |||| | ||||||||||| ||||||||||||| |||| ||||||||||| |||||||||| |
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| T |
13716119 |
cctcccatggctcttggattcagtacttagcattggtgttatacttcatgg--------catctgcaattcgaagcccgagttcaattcgttcttcttgt |
13716028 |
T |
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| Q |
189 |
ctatccctgcggtccccttccacaatgttatactacacgttgtctatctc |
238 |
Q |
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| T |
13716027 |
ctatccctggggtccccatccgcaatgttagactatatattgtctatctc |
13715978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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