View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3062_high_34 (Length: 241)
Name: NF3062_high_34
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_high_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 49732939 - 49732715
Alignment:
| Q |
13 |
catcatcaagaacagctttataagcagttccaaatccacctttccctaacatttcagctgaagcacgtaacaagtcctcaagttcaaaccttttctcacc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49732939 |
catcatcaagaacagctttataagcagttccaaatccacctttccctaacatttcagctgaagcacgtaacaaatcctcaagttcaaaccttttctcacc |
49732840 |
T |
|
| Q |
113 |
ttcaaaaaataccattctacccctctcaaaccctcctcctcc---tccttgtgtagggtatggacttgatgaatacactatcttttcactctcaaatagc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49732839 |
ttcaaaaaataccattctacccctctcaaaccctcctcctcctcctccttgtgtagggtatggacttgatgaatacactatcttttcactctcaaatagc |
49732740 |
T |
|
| Q |
210 |
ttcaaaccttttttctcctttgatt |
234 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
49732739 |
ttcaaaccttttttctcctttgatt |
49732715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 22837726 - 22837611
Alignment:
| Q |
13 |
catcatcaagaacagctttataagcagttccaaatccacctttccctaacatttcagctgaagcacgtaacaagtcctcaagttcaaaccttttctcacc |
112 |
Q |
| |
|
|||||||||||||||||||||| ||||||| || ||| ||||| |||||||| || |||||||| | ||| ||||| || |||||||| ||| | || |
|
|
| T |
22837726 |
catcatcaagaacagctttatagacagttcctaaggtacccttccccaacatttccgccgaagcacgaagcaaatcctctagctcaaacctcttcacccc |
22837627 |
T |
|
| Q |
113 |
ttcaaaaaataccatt |
128 |
Q |
| |
|
||| ||||| |||||| |
|
|
| T |
22837626 |
ttcgaaaaacaccatt |
22837611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University