View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3062_high_37 (Length: 238)
Name: NF3062_high_37
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_high_37 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 43416131 - 43415910
Alignment:
| Q |
1 |
tcatggatgttgccttcaacaacattgccatcatacaacttggttaatgagtcaatattgttccattccatgtaaatcaaatatagacagttcgacacat |
100 |
Q |
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| T |
43416131 |
tcatggatgttgccttcaacaacattgccatcatacaacttggttaatgagtcaatattgttccattccatgtaaatcaaatatagacagttcgacacat |
43416032 |
T |
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| Q |
101 |
gtccagtgaaaagttgagggttgactttgttattagaaaatgggtaagagagaactgttctatttacagtcaaaatcagttgtgaccactctctcttatt |
200 |
Q |
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| T |
43416031 |
gtccagtgaaaagttgagggttgactttgttattagaaaatgggtaagagagaactgttctatttacagtcaaaatcagttgtgaccactctctcttatt |
43415932 |
T |
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| Q |
201 |
cagttatttgttactacttact |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
43415931 |
cagttatttgttactacttact |
43415910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 43401230 - 43401127
Alignment:
| Q |
95 |
acacatgtccagtgaaaagttgaggg-ttgactttgttattagaaaatgggtaagagagaactgttctatttacagtcaaaatcagttgtgaccactctc |
193 |
Q |
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| T |
43401230 |
acacatgtccaatgaaaagttgaggggttgactttgttattaaaaaatagataagagggaaccgttctgtttaaattcaaaatcagttgtgaccactctc |
43401131 |
T |
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| Q |
194 |
tctt |
197 |
Q |
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|||| |
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| T |
43401130 |
tctt |
43401127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 43403697 - 43403617
Alignment:
| Q |
25 |
ttgccatcatacaa--cttggttaatgagtcaatattgttccattccatgtaaatcaaatatagacagttcgacacatgtccagt |
107 |
Q |
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| T |
43403697 |
ttgccatcatacaattcttggctaacaagtcactgttgttccattccatgtaaatc----attgacagatcgacacatgtccagt |
43403617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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