View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3062_high_43 (Length: 227)
Name: NF3062_high_43
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_high_43 |
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| [»] chr2 (7 HSPs) |
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| [»] scaffold1738 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 28 - 227
Target Start/End: Complemental strand, 8396148 - 8395949
Alignment:
| Q |
28 |
gcatatgtgtaagttgatctaaacaaattttcttttctataaagtcaggtaactacaaagaatgaaagaataacacattaaaaaatgaattaaatgattt |
127 |
Q |
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| T |
8396148 |
gcatatgtgtaagttgatctaaacaaagtttcttttctataaagtcaggtaactacaaagaatgaaagaataacacattaaaaaatgaattaaataattt |
8396049 |
T |
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| Q |
128 |
atatgtcttagaatattttgcttgcaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctctgatacact |
227 |
Q |
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| T |
8396048 |
atatgtcttagaatattttgcttgcaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctctgatacact |
8395949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 56 - 227
Target Start/End: Original strand, 8405451 - 8405623
Alignment:
| Q |
56 |
tttcttttctataaagtcaggtaact-acaaagaatgaaagaataacacattaaaaaatgaattaaatgatttatatgtcttagaatattttgcttgcaa |
154 |
Q |
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| T |
8405451 |
tttcttttctacaaagtcatgtaacttacaaagaatgaaagaataacacattaaaaaatgaattaaataatttatatgtcttagaatattttgcttgcaa |
8405550 |
T |
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| Q |
155 |
attcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctctgatacact |
227 |
Q |
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| T |
8405551 |
attcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctcagatacact |
8405623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 8430796 - 8430894
Alignment:
| Q |
129 |
tatgtcttagaatattttgcttgcaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctctgatacact |
227 |
Q |
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| T |
8430796 |
tatgtcttagaaaattttgctggaaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttcccttagctctgatacact |
8430894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 8376345 - 8376263
Alignment:
| Q |
145 |
ttgcttgcaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctctgatacact |
227 |
Q |
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| T |
8376345 |
ttgctggcaaattcatcaatttcgataccttccatgcgacaagaagctgattttgaggcaagttccctcagctctgatacact |
8376263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 8416753 - 8416825
Alignment:
| Q |
153 |
aaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctctgataca |
225 |
Q |
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| T |
8416753 |
aaattcatctatgtcaacaccttcgatgcgacaagaagctgattttgtggcacgttccctcagctctgataca |
8416825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 8411661 - 8411736
Alignment:
| Q |
145 |
ttgcttgcaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctctg |
220 |
Q |
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| T |
8411661 |
ttgctggcaaattcatctatttcgatactttccatgcgacaagaagctgattttgaggcaagttccctcagctctg |
8411736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 8433759 - 8433834
Alignment:
| Q |
145 |
ttgcttgcaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctctg |
220 |
Q |
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| T |
8433759 |
ttgctggcaaattcatctatttcgatactttccatgcgacaagaagctgattttgaggcaagttccctcagctctg |
8433834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1738 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold1738
Description:
Target: scaffold1738; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 177 - 95
Alignment:
| Q |
145 |
ttgcttgcaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctctgatacact |
227 |
Q |
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| T |
177 |
ttgctggcaaattcatctatgtcaacaccttcgatgcgacaagaagctgattttgatgcaagttccctcagctctgatacact |
95 |
T |
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