View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3062_high_5 (Length: 456)
Name: NF3062_high_5
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 443
Target Start/End: Complemental strand, 17382851 - 17382427
Alignment:
| Q |
19 |
ttctattcctaagatgtctggtgttctactttgggtgaattgtggactcaaagagaatgccatttccttaatgggtcttggaggaaaagatgtaagaact |
118 |
Q |
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| T |
17382851 |
ttctgttcctaagatgtctggtgttcttctttgggtgaattgtggactcaaagagaatgccatttccttaatgggtcttgtaggaagagatgtgagaact |
17382752 |
T |
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| Q |
119 |
caaaggaggtttagacattgttctggaattagctttgcttgtttttcaagtgcagttgttgaacctacaagatcctcagaggagagggtgtatgaagtgg |
218 |
Q |
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| T |
17382751 |
caaaggaggtttagacattgttctggaattagctttgcttgtttttcaagtgcagttgttgaacctacaagatcctcagaggagagagtgtatgaagtgg |
17382652 |
T |
|
| Q |
219 |
tgttgaagcaagcagccctagtgaaggaacaaagaaaagatattaaaaagagaggtttgaatttggatgataagcctattgaaggtgatttcaccaatgg |
318 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17382651 |
tgttgaagcaagcagctttagtgaaggaacaaagaaaagatattaaaaagagaggtttgaatttggatgataagcctattgaaggtgatttcaccaatgg |
17382552 |
T |
|
| Q |
319 |
ggaacttttgagttctgcttatgatagatgtggtgatgtgtgtgctgagtatgccaagacattttacttaggtacaacctttctttctctcttttgcgtt |
418 |
Q |
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| T |
17382551 |
ggaacttttgagttctgcttatgatagatgtggtgatgtatgtgctgagtatgccaagacattttacttaggtacaacctttctttctctcttttgcatt |
17382452 |
T |
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| Q |
419 |
tctcattcatattgtatattattta |
443 |
Q |
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| T |
17382451 |
tctcattcatattgtatattattta |
17382427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 392
Target Start/End: Complemental strand, 39526217 - 39526121
Alignment:
| Q |
296 |
attgaaggtgatttcaccaatggggaacttttgagttctgcttatgatagatgtggtgatgtgtgtgctgagtatgccaagacattttacttaggta |
392 |
Q |
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|||||||||||||| | |||||| || | |||| ||||||||||||| | |||||||| || |||||||||||||||||||| |||||| |||||| |
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| T |
39526217 |
attgaaggtgattttagcaatggagatttattgaattctgcttatgatcggtgtggtgaagtttgtgctgagtatgccaagactttttacctaggta |
39526121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 39526313 - 39526274
Alignment:
| Q |
194 |
tcagaggagagggtgtatgaagtggtgttgaagcaagcag |
233 |
Q |
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| T |
39526313 |
tcagaggagagggtgtatgaagtagttttgaagcaagcag |
39526274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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