View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3062_high_50 (Length: 209)
Name: NF3062_high_50
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_high_50 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 5e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 42205379 - 42205559
Alignment:
| Q |
14 |
atgaatatgttattagctcggtgagctcatcttacgcaaatctactgagaattgatcatcaatttgtgaattattttgttttgcctaagatcttaagagg |
113 |
Q |
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| T |
42205379 |
atgaatatgttattagctcggtgagctcatcttacgcaaatctactgagaattgatcatcaatttgtgaattattttgttttgcctaagatcttaagagg |
42205478 |
T |
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| Q |
114 |
aattttatttggtaccaagttttaagtacaaaaagtatcacatataagataggatatgatatgtgatcaatcagaaatatg |
194 |
Q |
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| T |
42205479 |
aattttatttggtaccaagttttaagtacaaaaagtatcacatataagataggatatgatatgtgatcaatcagaaatatg |
42205559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 14 - 172
Target Start/End: Original strand, 42212566 - 42212728
Alignment:
| Q |
14 |
atgaatatgttattagctcggtgagctcatct---tacgcaaatctactgagaattgatcatcaatttgtgaattattttgttttgcctaagatcttaag |
110 |
Q |
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| T |
42212566 |
atgaatatgttattagctcggtaagttcatctaattatgcagatctactgagtattgatcatcaatttgtgaatt-ttttgttttg-gtagaatcatacg |
42212663 |
T |
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| Q |
111 |
aggaattttat---ttggtaccaagttttaagtacaaaaagtatcacatataagataggatatga |
172 |
Q |
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| T |
42212664 |
acgaattctatttattggtacctagttttaagtacaaaaagcatcacatataagataggatatga |
42212728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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