View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3062_high_8 (Length: 412)
Name: NF3062_high_8
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_high_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 16 - 412
Target Start/End: Original strand, 13087338 - 13087740
Alignment:
| Q |
16 |
cactaacctcatttaatttccatttgatcttgtaactctaatgatcagcatattcatgtagtaataatcattatcatttgtttggattaaacaatactca |
115 |
Q |
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| T |
13087338 |
cactaatctcatttaatttccatttgatcttgtaactctaatgatcggcatatgcatgaagtaataaccattatcatttgtttggattaaacaatactca |
13087437 |
T |
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| Q |
116 |
cattattacatccaaaaaacctcactccattttgataggagccagatccaatacgaccttattgaaacctatgatttgtaatttacattatcgtaagttt |
215 |
Q |
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| T |
13087438 |
cattattacatccaaaaaacctcactccattttgataggagccagatccaatacgaccttattgaaacgtatgatttgtactttacattatcgtaagttt |
13087537 |
T |
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| Q |
216 |
ttaattttatatttgtttttgttgttaatgatg------atgaatgcaaataggagtgcgtatacacgctatatgtaaagactggatcaatcatcaaagg |
309 |
Q |
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| T |
13087538 |
ttaattttatattcgtttttgttgttaatgatgatgaatatgaatgcaaataggagtgcgtatacacaatatatgtaaagactggatcaatcatcaaagg |
13087637 |
T |
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| Q |
310 |
aggaacagattcaaaaatcagcattagattcgacgatgcaaagaaccaataagtatggatcccaaacctaaaatcatggggtgcaatgggagaaggtcat |
409 |
Q |
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| T |
13087638 |
tggaacagattcgaaaatcagcattagattcgacgatgcaaagaaccaatcagtgtggatcccaaacctaaaatcatggggtgcaatgggagaaggtcat |
13087737 |
T |
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| Q |
410 |
aac |
412 |
Q |
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| T |
13087738 |
aac |
13087740 |
T |
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