View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3062_low_1 (Length: 708)

Name: NF3062_low_1
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3062_low_1
NF3062_low_1
[»] chr6 (10 HSPs)
chr6 (9-656)||(2621082-2621715)
chr6 (9-651)||(2589508-2590148)
chr6 (31-476)||(2571325-2571770)
chr6 (52-476)||(2674837-2675261)
chr6 (84-468)||(2435859-2436243)
chr6 (34-473)||(2449033-2449472)
chr6 (31-478)||(2642967-2643414)
chr6 (241-477)||(2598288-2598524)
chr6 (336-436)||(33788355-33788455)
chr6 (396-463)||(3431225-3431292)
[»] chr3 (2 HSPs)
chr3 (566-645)||(35558723-35558802)
chr3 (593-647)||(8598488-8598542)
[»] chr1 (1 HSPs)
chr1 (566-656)||(36801898-36801988)
[»] chr2 (3 HSPs)
chr2 (566-656)||(44093687-44093775)
chr2 (572-647)||(26754290-26754365)
chr2 (595-656)||(6953389-6953451)
[»] chr5 (3 HSPs)
chr5 (571-656)||(8940880-8940965)
chr5 (579-647)||(33766302-33766372)
chr5 (589-629)||(10376252-10376293)
[»] chr4 (2 HSPs)
chr4 (572-645)||(48420713-48420788)
chr4 (327-372)||(31440455-31440500)
[»] chr8 (1 HSPs)
chr8 (306-427)||(27731253-27731374)
[»] chr7 (1 HSPs)
chr7 (566-645)||(23549385-23549464)


Alignment Details
Target: chr6 (Bit Score: 545; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 9 - 656
Target Start/End: Complemental strand, 2621715 - 2621082
Alignment:
Q  9 acatcatcactgcctcgcgttgttgagttgaaagagttagatggactcacgagtctacaaccacccgtgttttgcatgtgatctttattcatgatagatg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||    
T  2621715 acatcatcactgcctcgcgttgttgagttgaaagagttagatggactcacgagtctacaaccactcatgttttgcatgtgatctctattcatgatagatg 2621616  T
Q  109 gggtgtcatcgatttggtccttttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgtttc 208  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621615 gggtgtcatcggtttggtccttttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgtttc 2621516  T
Q  209 tgcgatcataccattttgaacaaccgcaatgatgtctgcattttgaatggtggataagcggtgagcaatgatgatggtggtgcgtccaacggtggctttg 308  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2621515 cgcgatcataccattttgaacaaccgcaatgatgtctgcattttgaatggtggataagcggtgagcgatgatgatggtggtgcgtccaacggtggctttg 2621416  T
Q  309 tctaaagcttcttggacaactctttcggattcagaatctagtgcacttgttgcttcatctagcaatagaatttttggcatttttatgatagctcttgcaa 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2621415 tctaaagcttcttggacaactctttcggattcagaatctagtgcacttgttgcttcatctagcaaaagaatttttggcatttttatgatagctcttgcaa 2621316  T
Q  409 tggaaatcctttgcttttgcccccctgacatttgaactcctctctccccaacctgcagtagtaaacatgcggctaataatgtgtcacccttgaagtagga 508  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||              |||||||||||| | ||||||||    
T  2621315 tggaaatcctttgcttttgccccccagacatttgaactcctctctccccaacctgcagtagta--------------aatgtgtcacccatcaagtagga 2621230  T
Q  509 atataagaattttaaatgtgaataagttaatttgaggagcaatttttacttagatagaaacccaaatgaaatttatttagacgcacacacaaatgtaaaa 608  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   |||||||||||||||||    
T  2621229 atataagaattttaaatgtgaataagttaatttgaggagcaatttttacttagatagaaacccaaatgaaatttatttgggtacacacacaaatgtaaaa 2621130  T
Q  609 aattaaaagagaaatgatttagttgcatcatttaaatctcttatcttt 656  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621129 aattaaaagagaaatgatttagttgcatcatttaaatctcttatcttt 2621082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 9 - 651
Target Start/End: Complemental strand, 2590148 - 2589508
Alignment:
Q  9 acatcatcactgcctcgcgttgttgagttgaaagagttagatggactcacgagtctacaaccacccgtgttttgcatgtgatctttattcatgatagatg 108  Q
    ||||||||| ||||||| |||| |||||| || ||| |||| ||||| ||||||||||||  || |||||||||||||||||||||||||||||||||||    
T  2590148 acatcatcattgcctcgtgttgctgagttcaaggagctagaaggactaacgagtctacaagtactcgtgttttgcatgtgatctttattcatgatagatg 2590049  T
Q  109 gggtgtcatcgatttggtccttttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgtttc 208  Q
    ||||||| ||  ||| |||| |||||||||| || ||||||||||||||||| ||||  |||||||||| ||||| ||||||||| ||||||||| ||||    
T  2590048 gggtgtcgtcagtttcgtccctttttgtttgttgaagacgaacaagggaggcataaattgaattgtcatcttgcacgaggctttcgtgagatcctatttc 2589949  T
Q  209 tgcgatcataccattttgaacaaccgcaatgatgtctgcattttgaatggtggataagcggtgagcaatgatgatggtggtgcgtccaacggtggctttg 308  Q
        ||| |||||||||||||||| |||||||||||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||||||| ||||||    
T  2589948 cataatcttaccattttgaacaactgcaatgatgtctgcattttggatggtagataggcggtgagcgatgatgatggtggtgcgtccaacggtagctttg 2589849  T
Q  309 tctaaagcttcttggacaactctttcggattcagaatctagtgcacttgttgcttcatctagcaatagaatttttggcatttttatgatagctcttgcaa 408  Q
    |||| ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2589848 tctagagcttcttggacaaccctttctgattcagaatcgagtgcacttgttgcttcatctagcaatagaatttttggcatttttatgatagctcttgcaa 2589749  T
Q  409 tggaaatcctttgcttttgcccccctgacatttgaactcctctctccccaacctgcagtagtaaacatgcggctaataatgtgtcacccttgaagtagga 508  Q
    ||| |||||||||||||||||||||||||||||| ||||||||||| | |||||| ||||||||| |||| ||| ||||||||||| || | ||||||||    
T  2589748 tggcaatcctttgcttttgcccccctgacatttgtactcctctctctctaacctgtagtagtaaagatgcagctgataatgtgtcagccatcaagtagga 2589649  T
Q  509 atataagaattttaaatgtgaataagttaatttgaggagcaatttttacttagatagaaacccaaatgaaatttatttagacgcacacacaaatgtaaaa 608  Q
    ||| ||||| ||||||||||| ||||||||||||||||||||||||||||||   | |||||||||| |||||||||| |  | | ||||||||||||||    
T  2589648 ataaaagaactttaaatgtgactaagttaatttgaggagcaatttttacttaagcacaaacccaaatcaaatttatttcg--gaatacacaaatgtaaaa 2589551  T
Q  609 aattaaaagagaaatgatttagttgcatcatttaaatctctta 651  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  2589550 aattaaaagagaaatgatttagttgcattatttaaatctctta 2589508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 31 - 476
Target Start/End: Original strand, 2571325 - 2571770
Alignment:
Q  31 ttgagttgaaagagttagatggactcacgagtctacaaccacccgtgttttgcatgtgatctttattcatgatagatggggtgtcatcgatttggtcctt 130  Q
    |||||||||||||| ||||  ||||||| ||||||| || || |||| ||| |||||||||| |||||||||||||||| ||||||||  ||||||| ||    
T  2571325 ttgagttgaaagagctagaatgactcacaagtctacgactactcgtgatttccatgtgatctctattcatgatagatggagtgtcatcactttggtcatt 2571424  T
Q  131 ttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgtttctgcgatcataccattttgaaca 230  Q
    | | ||||| ||||||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||  ||||   || || ||||||||||||     
T  2571425 tctagtttgttggagacgaacaagggatgtgtaaagagaattgtcattttgcatgaggctatcgtgagatcccatttccatgaccagaccattttgaacg 2571524  T
Q  231 accgcaatgatgtctgcattttgaatggtggataagcggtgagcaatgatgatggtggtgcgtccaacggtggctttgtctaaagcttcttggacaactc 330  Q
    |||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||| |  |||||||||| |||||||||||| ||||    
T  2571525 accgcaataatgtctgcattttggatggtagataagcggtgagcgatgatgatggtggttcgtccaactgcagctttgtctagagcttcttggacgactc 2571624  T
Q  331 tttcggattcagaatctagtgcacttgttgcttcatctagcaatagaatttttggcatttttatgatagctcttgcaatggaaatcctttgcttttgccc 430  Q
     ||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| | ||| ||||||||||| ||    
T  2571625 gttcggattcagaatcgagtgcacttgttgcttcgtctaacaatagaatttttggcatttttatgatggctcttgcaattgcaattctttgcttttgtcc 2571724  T
Q  431 ccctgacatttgaactcctctctccccaacctgcagtagtaaacat 476  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||    
T  2571725 ccctgacatttgaactcccctctccccaacctgtagtagtaaacat 2571770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 52 - 476
Target Start/End: Original strand, 2674837 - 2675261
Alignment:
Q  52 gactcacgagtctacaaccacccgtgttttgcatgtgatctttattcatgatagatggggtgtcatcgatttggtccttttttgtttgctggagacgaac 151  Q
    |||| |||||||||| || || |||||||||||||||| || |||||||||||||||| ||||||||  |||| || ||| | ||||| |||||||||||    
T  2674837 gacttacgagtctacgactactcgtgttttgcatgtgacctctattcatgatagatggagtgtcatcagtttgatcatttctagtttgttggagacgaac 2674936  T
Q  152 aagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgtttctgcgatcataccattttgaacaaccgcaatgatgtctgcattt 251  Q
     ||||||| |||||||||||| |||||||||||||||||||| |||||||| |||||   |||| |||||||||| ||||| ||||||||||||||||||    
T  2674937 gagggaggtgtaaagagaattttcattttgcatgaggctttcgtgagatcccgtttccatgatcttaccattttggacaactgcaatgatgtctgcattt 2675036  T
Q  252 tgaatggtggataagcggtgagcaatgatgatggtggtgcgtccaacggtggctttgtctaaagcttcttggacaactctttcggattcagaatctagtg 351  Q
    || ||||| |||||||||||||| ||||||||||||||||||||||| |  |||||||||| ||||||||| ||||||| ||||||||||||||| ||||    
T  2675037 tggatggttgataagcggtgagcgatgatgatggtggtgcgtccaaccgccgctttgtctagagcttcttgaacaactcgttcggattcagaatcaagtg 2675136  T
Q  352 cacttgttgcttcatctagcaatagaatttttggcatttttatgatagctcttgcaatggaaatcctttgcttttgcccccctgacatttgaactcctct 451  Q
    ||||||||||||||||||| |||| |||||| ||||||||||| || ||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||    
T  2675137 cacttgttgcttcatctagtaataaaattttaggcatttttattatggctcttgcaatggcaatcctttgtttttgtccccctgacatctgaactcctct 2675236  T
Q  452 ctccccaacctgcagtagtaaacat 476  Q
    |||||||||||| |||| |||||||    
T  2675237 ctccccaacctgtagtaataaacat 2675261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 84 - 468
Target Start/End: Complemental strand, 2436243 - 2435859
Alignment:
Q  84 atgtgatctttattcatgatagatggggtgtcatcgatttggtccttttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgca 183  Q
    ||||||| |||||||||||||||| |||| ||| ||  |||||| ||||| || || |||||| |||| ||||| | |||||  ||| ||||||||||||    
T  2436243 atgtgatgtttattcatgatagatagggtatcaccgtcttggtcatttttggtgtgttggagatgaactagggatgtgtaaatggaactgtcattttgca 2436144  T
Q  184 tgaggctttcatgagatcctgtttctgcgatcataccattttgaacaaccgcaatgatgtctgcattttgaatggtggataagcggtgagcaatgatgat 283  Q
    |||||||||| ||||||||||||||   |||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  2436143 tgaggctttcgtgagatcctgtttccatgatcttaccattttgaacaactgcaatgatgtctgcattttggatggtggataagcggtgagcgatgatgat 2436044  T
Q  284 ggtggtgcgtccaacggtggctttgtctaaagcttcttggacaactctttcggattcagaatctagtgcacttgttgcttcatctagcaatagaattttt 383  Q
    |||||||||||||||    |||||||||| ||||||||||||||||| ||| ||||||||||| || |||||||||||||| ||||||||||||||||||    
T  2436043 ggtggtgcgtccaactacagctttgtctagagcttcttggacaactcgttcagattcagaatcgagagcacttgttgcttcgtctagcaatagaattttt 2435944  T
Q  384 ggcatttttatgatagctcttgcaatggaaatcctttgcttttgcccccctgacatttgaactcctctctccccaacctgcagta 468  Q
    ||||||||||  || ||||||||||||| ||||||||||||||| ||||| |||||||||| ||| |||||||||||||| ||||    
T  2435943 ggcatttttactatggctcttgcaatggcaatcctttgcttttgtcccccagacatttgaattcccctctccccaacctgtagta 2435859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 34 - 473
Target Start/End: Complemental strand, 2449472 - 2449033
Alignment:
Q  34 agttgaaagagttagatggactcacgagtctacaaccacccgtgttttgcatgtgatctttattcatgatagatggggtgtcatcgatttggtccttttt 133  Q
    ||||||||||| ||||  ||||||||||| ||  || || ||||||||| ||||||||| |||||||||||| ||| ||||  ||  ||||||| ||| |    
T  2449472 agttgaaagagctagaacgactcacgagtgtatcactacacgtgttttggatgtgatctctattcatgataggtggagtgtggtcactttggtcatttct 2449373  T
Q  134 tgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgtttctgcgatcataccattttgaacaacc 233  Q
     ||||| || |||||||| ||||||| |||||||||  ||||||||||||| |||||||| ||||||||||||||  ||||| ||||||||||||| |      
T  2449372 agtttgttgaagacgaacgagggaggtgtaaagagagctgtcattttgcataaggctttcgtgagatcctgtttccacgatcttaccattttgaacgatt 2449273  T
Q  234 gcaatgatgtctgcattttgaatggtggataagcggtgagcaatgatgatggtggtgcgtccaacggtggctttgtctaaagcttcttggacaactcttt 333  Q
    |||||||| |||||| ||   |||||||||||||||||||| ||||| |||||||||||| |||| |||||||| || ||||||||||||||||||| ||    
T  2449272 gcaatgatatctgcagttctgatggtggataagcggtgagcgatgataatggtggtgcgttcaactgtggctttctcaaaagcttcttggacaactcgtt 2449173  T
Q  334 cggattcagaatctagtgcacttgttgcttcatctagcaatagaatttttggcatttttatgatagctcttgcaatggaaatcctttgcttttgcccccc 433  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||| ||||  |||| || || ||||||||||||||||||||||||||||| |||||    
T  2449172 cggattcaaaatctagtgcacttgttgcttcgtctagcaatagaattcttggatttttgattatggctcttgcaatggaaatcctttgcttttgtccccc 2449073  T
Q  434 tgacatttgaactcctctctccccaacctgcagtagtaaa 473  Q
    ||||||||| ||||| |||||||||||||  |||||||||    
T  2449072 tgacatttgtactcccctctccccaacctatagtagtaaa 2449033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 31 - 478
Target Start/End: Original strand, 2642967 - 2643414
Alignment:
Q  31 ttgagttgaaagagttagatggactcacgagtctacaaccacccgtgttttgcatgtgatctttattcatgatagatggggtgtcatcgatttggtcctt 130  Q
    |||||||||||||| ||||  ||||||||||||||| || || |||||||||||||||| || | |||||||||||||  | ||| ||  ||||||| ||    
T  2642967 ttgagttgaaagagctagaacgactcacgagtctacgactactcgtgttttgcatgtgacctctgttcatgatagatgcagggtcctcattttggtcatt 2643066  T
Q  131 ttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgtttctgcgatcataccattttgaaca 230  Q
    | | ||||| ||||||||||| || |||| |||||||||||| |||| ||||  |||||||||||||| |||||||||    ||| | ||||||||||      
T  2643067 tctagtttgttggagacgaacgagagaggtgtaaagagaattttcatcttgcgcgaggctttcatgagttcctgtttccattatcttgccattttgaaac 2643166  T
Q  231 accgcaatgatgtctgcattttgaatggtggataagcggtgagcaatgatgatggtggtgcgtccaacggtggctttgtctaaagcttcttggacaactc 330  Q
    || ||||||||||| |||||||| |||||||||| ||| ||||| ||||||||||| ||||||||||| | | ||||||||| ||| |||||||||| ||    
T  2643167 actgcaatgatgtcagcattttggatggtggataggcgatgagcgatgatgatggttgtgcgtccaactgcgactttgtctagagcgtcttggacaattc 2643266  T
Q  331 tttcggattcagaatctagtgcacttgttgcttcatctagcaatagaatttttggcatttttatgatagctcttgcaatggaaatcctttgcttttgccc 430  Q
     ||||||||||||||| ||||||||||| ||||| || | ||||| |||||| ||||||||||| || ||||||||||||| ||||||||| ||||||||    
T  2643267 gttcggattcagaatcaagtgcacttgtcgcttcgtccaacaataaaattttaggcatttttattatggctcttgcaatggcaatcctttgtttttgccc 2643366  T
Q  431 ccctgacatttgaactcctctctccccaacctgcagtagtaaacatgc 478  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2643367 ccctgacatttgaactcctctctccccaacctgtagtagtaaacatgc 2643414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 241 - 477
Target Start/End: Original strand, 2598288 - 2598524
Alignment:
Q  241 tgtctgcattttgaatggtggataagcggtgagcaatgatgatggtggtgcgtccaacggtggctttgtctaaagcttcttggacaactctttcggattc 340  Q
    ||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||| |  |||||||||| |||||||||||| |||| |||||||||    
T  2598288 tgtctgcattttggatggtagataatcggtgagcgatgatgatggtggtgcgtccaactgaagctttgtctagagcttcttggacgactcgttcggattc 2598387  T
Q  341 agaatctagtgcacttgttgcttcatctagcaatagaatttttggcatttttatgatagctcttgcaatggaaatcctttgcttttgcccccctgacatt 440  Q
    |||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| | ||| ||||||||||| ||||||||||||    
T  2598388 agaatcgagtgcacttgttgcttcgtctaacaatagaatttttggcatttttatgatggctcttgcaattgcaattctttgcttttgtccccctgacatt 2598487  T
Q  441 tgaactcctctctccccaacctgcagtagtaaacatg 477  Q
    || ||||| |||||||||||||| |||||||||||||    
T  2598488 tgtactcccctctccccaacctgtagtagtaaacatg 2598524  T

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Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 336 - 436
Target Start/End: Original strand, 33788355 - 33788455
Alignment:
Q  336 gattcagaatctagtgcacttgttgcttcatctagcaatagaatttttggcatttttatgatagctcttgcaatggaaatcctttgcttttgcccccctg 435  Q
    |||||||| || |||||||| ||||||||||| ||||  ||||||  |||  ||||||||||||||||||||||||  || ||||||||||| || ||||    
T  33788355 gattcagagtcaagtgcactagttgcttcatcaagcagaagaattactggattttttatgatagctcttgcaatggctattctttgcttttgtcctcctg 33788454  T
Q  436 a 436  Q
    |    
T  33788455 a 33788455  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 396 - 463
Target Start/End: Original strand, 3431225 - 3431292
Alignment:
Q  396 atagctcttgcaatggaaatcctttgcttttgcccccctgacatttgaactcctctctccccaacctg 463  Q
    |||||||||||||| | ||||||||||||||| || || || | ||||||||||| ||| ||||||||    
T  3431225 atagctcttgcaattgcaatcctttgcttttgtccaccagataattgaactcctcgctcaccaacctg 3431292  T

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Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 566 - 645
Target Start/End: Complemental strand, 35558802 - 35558723
Alignment:
Q  566 aaacccaaatgaaatttatttagacgcacacacaaatgtaaaaaattaaaagagaaatgatttagttgcatcatttaaat 645  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||    
T  35558802 aaacccaaatcaaatttatttacacgcacacacaaatgtaaaaaattaaaagaaaaattatttagttacatcatttaaat 35558723  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 593 - 647
Target Start/End: Complemental strand, 8598542 - 8598488
Alignment:
Q  593 acacacaaatgtaaaaaattaaaagagaaatgatttagttgcatcatttaaatct 647  Q
    ||||||||||  |||||||||||||| |||| || ||||| ||||||||||||||    
T  8598542 acacacaaataaaaaaaattaaaagataaattatatagttacatcatttaaatct 8598488  T

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Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 566 - 656
Target Start/End: Original strand, 36801898 - 36801988
Alignment:
Q  566 aaacccaaatgaaatttatttagacgcacacacaaatgtaaaaaattaaaagagaaatgatttagttgcatcatttaaatctcttatcttt 656  Q
    |||||||||| |||||||||| | ||||||||||||||||||||||| |||||||||  |||||||  |||||||||||||| || |||||    
T  36801898 aaacccaaatcaaatttatttgggcgcacacacaaatgtaaaaaatttaaagagaaagtatttagtcacatcatttaaatctattctcttt 36801988  T

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Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 566 - 656
Target Start/End: Original strand, 44093687 - 44093775
Alignment:
Q  566 aaacccaaatgaaatttatttagacgcacacacaaatgtaaaaaattaaaagagaaatgatttagttgcatcatttaaatctcttatcttt 656  Q
    |||| ||||| |||||||||| || |||||||||||||||||||||||||||| |||| |||||||  |||||||||||||| ||||||||    
T  44093687 aaactcaaattaaatttattt-ga-gcacacacaaatgtaaaaaattaaaagaaaaattatttagtaacatcatttaaatctattatcttt 44093775  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 572 - 647
Target Start/End: Original strand, 26754290 - 26754365
Alignment:
Q  572 aaatgaaatttatttagacgcacacacaaatgtaaaaaattaaaagagaaatgatttagttgcatcatttaaatct 647  Q
    |||| ||||| |||| ||| |||||| |||| |||||||||||||||||| | |||||||  |||| |||||||||    
T  26754290 aaattaaattgatttggacacacacataaatataaaaaattaaaagagaagttatttagtcacatcgtttaaatct 26754365  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 595 - 656
Target Start/End: Complemental strand, 6953451 - 6953389
Alignment:
Q  595 acacaaatgtaaaaaa-ttaaaagagaaatgatttagttgcatcatttaaatctcttatcttt 656  Q
    |||||||||||||||| ||||||||||||| ||||| |  |||||||||||||| || |||||    
T  6953451 acacaaatgtaaaaaaattaaaagagaaattatttaatgacatcatttaaatctattctcttt 6953389  T

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Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 571 - 656
Target Start/End: Original strand, 8940880 - 8940965
Alignment:
Q  571 caaatgaaatttatttagacgcacacacaaatgtaaaaaattaaaagagaaatgatttagttgcatcatttaaatctcttatcttt 656  Q
    ||||| ||||||||| |||||||||||||||||||||| ||||||| | ||||||||||||  |||||||||| ||| || |||||    
T  8940880 caaatcaaatttattaagacgcacacacaaatgtaaaatattaaaatataaatgatttagtcacatcatttaattcttttttcttt 8940965  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 579 - 647
Target Start/End: Complemental strand, 33766372 - 33766302
Alignment:
Q  579 atttatttagacgcaca--cacaaatgtaaaaaattaaaagagaaatgatttagttgcatcatttaaatct 647  Q
    |||||||| ||||||||  |||||||||||||||||||||||||||| |||| ||   |||||||||||||    
T  33766372 atttatttggacgcacacacacaaatgtaaaaaattaaaagagaaattatttggtcatatcatttaaatct 33766302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 629
Target Start/End: Complemental strand, 10376293 - 10376252
Alignment:
Q  589 acgcacacacaaatgta-aaaaattaaaagagaaatgattta 629  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  10376293 acgcacacacaaatgtataaaaattaaaagagaaatgattta 10376252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 572 - 645
Target Start/End: Original strand, 48420713 - 48420788
Alignment:
Q  572 aaatgaaatttatttagacgcaca--cacaaatgtaaaaaattaaaagagaaatgatttagttgcatcatttaaat 645  Q
    |||| |||||||||||||||||||  |||||||||| |||||||||||| |||| |||||||| ||||||||||||    
T  48420713 aaattaaatttatttagacgcacatacacaaatgtagaaaattaaaagaaaaattatttagttacatcatttaaat 48420788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 31440500 - 31440455
Alignment:
Q  327 actctttcggattcagaatctagtgcacttgttgcttcatctagca 372  Q
    ||||||||||||| |||||| |||||||||||||||||||| ||||    
T  31440500 actctttcggattgagaatccagtgcacttgttgcttcatcaagca 31440455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 306 - 427
Target Start/End: Complemental strand, 27731374 - 27731253
Alignment:
Q  306 ttgtctaaagcttcttggacaactctttcggattcagaatctagtgcacttgttgcttcatctagcaatagaatttttggcatttttatgatagctcttg 405  Q
    ||||||||||||| ||| ||||| | ||| |||||   |||||||||||||||||||||||| |||||||  ||||| ||  || |||  ||||||||||    
T  27731374 ttgtctaaagcttgttgtacaacacgttccgattcgacatctagtgcacttgttgcttcatcaagcaataatattttagggtttcttaaaatagctcttg 27731275  T
Q  406 caatggaaatcctttgcttttg 427  Q
    ||||||  | ||||||||||||    
T  27731274 caatggccaccctttgcttttg 27731253  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 566 - 645
Target Start/End: Complemental strand, 23549464 - 23549385
Alignment:
Q  566 aaacccaaatgaaatttatttagacgcacacacaaatgtaaaaaattaaaagagaaatgatttagttgcatcatttaaat 645  Q
    |||||||||| ||||| |||| | | ||||||||||| | ||||||||||||| |||| |||||||  ||| ||||||||    
T  23549464 aaacccaaatcaaattgatttgggcacacacacaaatatcaaaaattaaaagaaaaattatttagtcacattatttaaat 23549385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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